Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0022
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      39   8e-04
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    29   0.66 
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    29   0.66 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    28   1.5  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   4.7  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    26   6.1  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   6.1  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    26   6.1  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    25   8.1  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 15/43 (34%), Positives = 30/43 (69%)
 Frame = +1

Query: 508 QYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHI 636
           +Y + I+    E++EK S+I++N+ + I++ GN+ G +RK H+
Sbjct: 79  KYHVNIIYGFPEKEEKQSNIIYNSCIYITENGNLGGVYRKVHL 121


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 550 EKHSDILWNTAVVISDTGNVIGKHRKNHI 636
           E+    L+NTA+V   +G +I  HRK H+
Sbjct: 129 ERKDGKLYNTAMVFDPSGKLIAVHRKIHL 157


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 453 NSHHGCFSLVQNAKGMFHNSWKQMMLTPSWPVTSMIFLTLLKIAFFCSLTGR 298
           N+   CF   QN+  + +       +   +P T   F+ LLK AFF  L GR
Sbjct: 242 NAASHCFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDHLFGR 293


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +1

Query: 517  MVIVSSILERDEKHSDIL 570
            +++VS++LE DEKH D++
Sbjct: 998  LIVVSNLLEMDEKHVDVV 1015


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 562 PNASRPFLISRTRSPLRTDGEFPKEGRGRP 473
           P  ++P ++  T +  + D   PK GRGRP
Sbjct: 316 PPLNKPKILFGTSTENKIDENRPKRGRGRP 345


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 409 HVPQLLETDDVNTLLAGXIDDFLDFIENC 323
           ++P+LLE  D+N L  G + + LD + NC
Sbjct: 222 NLPKLLERPDINDLHQGILQE-LDSLCNC 249


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 81  NNLXGRDLEEFNRIHFGRRNNLEI 152
           NN+  R +EE N I  G+R  LE+
Sbjct: 8   NNILKRHIEEDNNIDNGKRKKLEL 31


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 589 ISDTGNVIGKHRKNHIXRVGXF 654
           + D G  +GKHRKN + R G F
Sbjct: 90  LKDEGK-LGKHRKNRLRRPGRF 110


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 278 NAELFLPSNSRGSGLLVLGRESVCGD 201
           NAEL LP+N   S  + L + S+C D
Sbjct: 175 NAELGLPNNKDSSNGVRLDKSSICID 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,161
Number of Sequences: 5004
Number of extensions: 54734
Number of successful extensions: 180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)