Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0022
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 99 3e-21
05_06_0166 + 26093618-26095381,26095820-26096039,26096345-260966... 32 0.39
01_06_0595 - 30485460-30486097,30486721-30487179,30487339-304875... 32 0.39
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 30 1.6
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 29 2.8
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 29 3.7
02_01_0174 - 1193696-1193726,1193822-1194175,1194307-1194542,119... 29 3.7
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 28 8.5
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 99.1 bits (236), Expect = 3e-21
Identities = 49/92 (53%), Positives = 62/92 (67%), Gaps = 5/92 (5%)
Frame = +2
Query: 245 PENLKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVTGQEGVNIICFQ-----ELWNM 409
P ++VG++Q+SIA+PT +QKKAI KVK +ID G GVNI+C Q E W M
Sbjct: 93 PRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLSEAWTM 152
Query: 410 PFAFCTREKQPWCEFXESAEDGPTTTLLRELA 505
PFAFCTREK+ WCEF E DG +T L++LA
Sbjct: 153 PFAFCTREKR-WCEFAEPV-DGESTQFLQQLA 182
Score = 81.4 bits (192), Expect = 6e-16
Identities = 37/52 (71%), Positives = 42/52 (80%)
Frame = +1
Query: 508 QYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIXRVGXFNES 663
+Y MVIVS ILERD H +I+WNTAVVI + GN+IG HRKNHI RVG FNES
Sbjct: 184 KYNMVIVSPILERDVNHGEIVWNTAVVIGNHGNIIGIHRKNHIPRVGDFNES 235
>05_06_0166 +
26093618-26095381,26095820-26096039,26096345-26096674,
26097481-26098029,26098366-26098426,26099737-26099824,
26100240-26100299
Length = 1023
Score = 32.3 bits (70), Expect = 0.39
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -1
Query: 403 PQLLETDDVNTLLAGXIDDFLDFIENCFLLLVDWTIGGHRDGMLNYSYLQILGGRVCSSL 224
P+L E D VNTL + LD + L+ + G RD + L +LG R+ SL
Sbjct: 525 PKLKECDIVNTLQWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISMSL 584
>01_06_0595 -
30485460-30486097,30486721-30487179,30487339-30487558,
30488229-30489980
Length = 1022
Score = 32.3 bits (70), Expect = 0.39
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -1
Query: 403 PQLLETDDVNTLLAGXIDDFLDFIENCFLLLVDWTIGGHRDGMLNYSYLQILGGRVCSSL 224
P+L E D VNTL + LD + L+ + G RD + L +LG R+ SL
Sbjct: 521 PKLKECDIVNTLQWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISLSL 580
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 550 EKHSDILWNTAVVISDTGNVIGKHRKNHIXRV 645
E+ S L+NT VI G + KHRK H+ +
Sbjct: 67 ERSSGRLFNTCCVIGPDGQIKAKHRKLHLFEI 98
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 550 EKHSDILWNTAVVISDTGNVIGKHRKNHI 636
E+ + L+NT V G + GKHRK H+
Sbjct: 134 ERSGNKLYNTCCVFGSDGELKGKHRKIHL 162
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 474 PSSADSXNSHHGCFSLVQNAKGMFHNSWKQMMLTPSW 364
PS+ S N F L++N NSW Q+++T W
Sbjct: 628 PSTTASVNLDESQFKLLRNCFQGTSNSWGQVIVTAGW 664
>02_01_0174 -
1193696-1193726,1193822-1194175,1194307-1194542,
1194629-1194741,1195963-1196161,1196427-1196513
Length = 339
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 220 RPRTSRPDPREFEGRNSSAFHRGAHRSS 303
R R PD R++ GR++S + RG R S
Sbjct: 240 RGRDRSPDRRDYRGRSASPYGRGRERGS 267
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -2
Query: 447 HHGCFSLVQNAKGMFHNSWKQMMLTPSWP--VTSMIFLTLLKIAFF 316
H C ++++ + G+ N W+ + PS+P SMI L + F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,910,304
Number of Sequences: 37544
Number of extensions: 388862
Number of successful extensions: 1106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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