Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0022
         (715 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)                 33   0.23 
SB_8320| Best HMM Match : p450 (HMM E-Value=0)                         33   0.23 
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.30 
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)          32   0.40 
SB_30534| Best HMM Match : EGF (HMM E-Value=0.12)                      25   2.6  
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)             29   2.8  
SB_52268| Best HMM Match : SecA_PP_bind (HMM E-Value=0.33)             29   2.8  
SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_9767| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_53210| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_29893| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
          Length = 242

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 514 AMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHI 636
           A ++  SI ER       L+NT++    +GN++GKHRK H+
Sbjct: 80  AYIVGGSIPERASNRK--LYNTSLSYDPSGNLMGKHRKIHL 118


>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1207

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -1

Query: 559 NASRPFLISRTRSPLRTDGEFPKEGRGRPVFS*FGKLAPRLLLPC 425
           N+++ F  +  RS +R DGE  K GR    FS   KLA  +L  C
Sbjct: 382 NSAKSFTRNGARSIVRADGEERKFGRSEEEFSDLDKLAINILYDC 426


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 160  KNPRSLQLRRLTSTSPHTLSRPRTSRPDPREF-EGRNSSAFHRGAHRSSSQRAKE 321
            K PR     R  S+SP   SRP+ + P PR   E R  S   RG+ RS S   +E
Sbjct: 1047 KRPRHQSRERRPSSSPPRRSRPQRTSPSPRRTPEDRRRS---RGSRRSPSPPKRE 1098


>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
          Length = 128

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 514 AMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHI 636
           A ++  SI ER       L+NT++    +GN++GKHRK H+
Sbjct: 36  AYIVGGSIPERASNGK--LYNTSLSYDPSGNLMGKHRKIHL 74


>SB_30534| Best HMM Match : EGF (HMM E-Value=0.12)
          Length = 521

 Score = 25.4 bits (53), Expect(2) = 2.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 166 PRSLQLRRLTSTSPHTLSRPRTSRPDPR 249
           PR+ + R +T        RP+T RP+PR
Sbjct: 266 PRTEKPRPITQPPTTQRPRPKTRRPEPR 293



 Score = 22.6 bits (46), Expect(2) = 2.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 223 PRTSRPDPREFE 258
           PRT RPDP+ ++
Sbjct: 313 PRTYRPDPKTYQ 324


>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
          Length = 1425

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 245  PENLKVGIVQHSIAVPTDR-PVNEQKKAIFNKVKKIIDVTGQEGVN 379
            P N     V   I VP  + P N+ ++A+F++V K+ ++ GQ+ V+
Sbjct: 971  PNNPSEEFVHKPILVPVMKSPRNDDERALFSRVSKVKNLWGQDLVD 1016


>SB_52268| Best HMM Match : SecA_PP_bind (HMM E-Value=0.33)
          Length = 774

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 236 DPTPENLK-VGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVTGQE 370
           D  PEN   V IV+H I VP D P  +++  I       + +TGQ+
Sbjct: 265 DSLPENTNSVVIVEHPIEVPDDPPRIQKETIIVETPSLDVVITGQK 310


>SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 163 NPRSLQLRRLTSTSPHTLSRPRTSRPDP 246
           +PR + L+   S+SPHT  R R+S  DP
Sbjct: 687 SPRHVLLQEARSSSPHTSIRNRSSSSDP 714


>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 514 AMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRK 627
           A ++  SI ER       L+NT++    +GN++GKHRK
Sbjct: 82  AYIVGGSIPERASNGK--LYNTSLSYDPSGNLMGKHRK 117


>SB_9767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +1

Query: 148 KSN*KNPRSLQLRRLTSTSPH---TLSRPRTSRPDPREFEGRNSSAFHRGAHRSSSQRAK 318
           K+N K  +  Q +   +  P+   TL R   + P PREF   +   F  G HRS     +
Sbjct: 4   KNNKKKKQEKQNKTKKTDHPNNRLTLGRGVLTGPPPREFFSGSPDQFRNGIHRSMEMDLE 63

Query: 319 ESN 327
           +++
Sbjct: 64  DTS 66


>SB_53210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 211 TLSRPRTSRPDPREFEGRNSSAFHRGAHRSSSQRAKESN 327
           TL R   + P PREF   +   F  G HRS     ++++
Sbjct: 29  TLGRGVLTGPPPREFFSGSPDQFRNGIHRSMEMDLEDTS 67


>SB_29893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 713 WSANTGMAXVTFXXVSLDSLXSPTLXMWFLRCFPITFPVSLITT 582
           W   T     TF  VSL+SL   +L  ++  C P+ +  S +TT
Sbjct: 86  WCQTTAFLYYTFAIVSLESLAFISLDRFYAICRPLQYR-SAVTT 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,372,239
Number of Sequences: 59808
Number of extensions: 440292
Number of successful extensions: 1206
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)