Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0020
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    27   2.6  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   6.0  

>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
 Frame = +2

Query: 20  RTDHTDFQSQNHNLIKSN*LCIIKIYTEMDIIFRKINSIEHFDIICNEIINNMYTR---- 187
           R D  DF + +H+LIK        +    D   +K  +++  +   NE+ + +       
Sbjct: 181 RKDKPDFSNGHHDLIKQITELQDMLDKARDQARKKSRTVDILEGKVNELTHQLNMADSKY 240

Query: 188 SDEKISEIVENNVIQTAK-QELRI--SFQRINMTL 283
           ++ K++   +NN I+T K Q L I  +FQ+I   L
Sbjct: 241 NESKVANNSQNNQIKTLKAQNLNIHKNFQKIQSEL 275


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 22/53 (41%), Positives = 26/53 (49%)
 Frame = -3

Query: 175  VVYYFVTYYIKMFYRIYFPEYNIHFSIYFDNTQLVRFY*IVIL*LKISMISTV 17
            V + F  Y I  FY I FP Y IH S+ F     +R   +  L LKI M S V
Sbjct: 999  VKHDFYAYAIG-FYSISFPMYAIHASVKFLKLDYLRSL-MNKLNLKIVMRSLV 1049


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,523
Number of Sequences: 5004
Number of extensions: 51831
Number of successful extensions: 137
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)