BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0020 (705 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_55399| Best HMM Match : C1_4 (HMM E-Value=4.8) 30 2.1 SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7 SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26) 28 6.4 SB_6185| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5 SB_30224| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5 >SB_55399| Best HMM Match : C1_4 (HMM E-Value=4.8) Length = 335 Score = 29.9 bits (64), Expect = 2.1 Identities = 10/32 (31%), Positives = 17/32 (53%) Frame = -3 Query: 178 HVVYYFVTYYIKMFYRIYFPEYNIHFSIYFDN 83 H YY+ YY +Y Y+ Y ++ Y+D+ Sbjct: 264 HSYYYYYYYYYYYYYYYYYYYYYYYYYYYYDD 295 >SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 167 Score = 29.1 bits (62), Expect = 3.7 Identities = 10/39 (25%), Positives = 18/39 (46%) Frame = -3 Query: 178 HVVYYFVTYYIKMFYRIYFPEYNIHFSIYFDNTQLVRFY 62 H YY+ YY +Y Y+ Y ++ Y+ + +Y Sbjct: 101 HAYYYYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYY 139 >SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26) Length = 1195 Score = 28.3 bits (60), Expect = 6.4 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = -1 Query: 246 SCFAV*ITLFSTISEIFSSLRVYMLFIISLHIISKCSIEFIF 121 S V +L ST++ + SL F+ +L CSIEF F Sbjct: 633 SVLRVVYSLLSTLAHLALSLSFLSFFLSALSFCINCSIEFTF 674 >SB_6185| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 116 Score = 27.9 bits (59), Expect = 8.5 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 4/39 (10%) Frame = +1 Query: 226 DSNCKTG----TPDIISTNKYDINMIIEHLNTKDWNQEK 330 +SNCK+G T D +K ++ +++ L+ KD N+EK Sbjct: 39 NSNCKSGQAEKTKDGRLRSKEEVEQLLDRLSDKDKNKEK 77 >SB_30224| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 116 Score = 27.9 bits (59), Expect = 8.5 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 4/39 (10%) Frame = +1 Query: 226 DSNCKTG----TPDIISTNKYDINMIIEHLNTKDWNQEK 330 +SNCK+G T D +K ++ +++ L+ KD N+EK Sbjct: 39 NSNCKSGQAEKTKDGRLRSKEEVEQLLDRLSDKDKNKEK 77 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,232,676 Number of Sequences: 59808 Number of extensions: 314591 Number of successful extensions: 705 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 562 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 647 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1853669818 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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