Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0019
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    29   1.1  
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo...    28   1.9  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   2.6  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   4.5  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 22/81 (27%), Positives = 36/81 (44%)
 Frame = +2

Query: 17  RLDKEVVIKSNAVFKVPEPNRYILESSVSLCHSSLGADRVSKLLLDVSPTKFVFLAQTPF 196
           +L KE V    A       +  +L SS +L   +   +++ K LL+      +  A +  
Sbjct: 99  KLKKEEVASLIAKLAEERIDTSLLSSSKNLGKQATAKEKLKKSLLEEKLGLPLSDADSRL 158

Query: 197 VKVIDLEGTVDVQSKAKTQRP 259
            KV+D+E T    S A+T  P
Sbjct: 159 YKVVDVETTTTKSSTAETNAP 179


>SPBC31F10.06c |sar1||ADP-ribosylation factor
           Sar1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 190

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = -3

Query: 462 EKCPVGDIFLVTR*DDISGYIYS--LFRDQMTDDRELAVCLFCCELEILEVFRQSLDADL 289
           E+  +G++   T   D+ G+  +  L+RD   +   +   + CC+ E L   +  LDA L
Sbjct: 57  EELAIGNVRFTTF--DLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDA-L 113

Query: 288 LALQKL 271
           LA+++L
Sbjct: 114 LAMEEL 119


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 246  FALLCTSTVPSKSITFTNGVWAKKTNLVGETSNSSLETRSAP 121
            F++  +S +P  +I FTN +  + T      SNS    ++ P
Sbjct: 1298 FSVATSSDIPKANIDFTNDISTQNTFPASPVSNSGFSRQTYP 1339


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 604 TISQKTAPYFKKIDEDXRREWSK 672
           TIS+K  P+ K+I ++   EWS+
Sbjct: 293 TISKKPEPFIKRIADNLVSEWSR 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,267,591
Number of Sequences: 5004
Number of extensions: 64183
Number of successful extensions: 175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)