Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0019
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1153 - 34942608-34942975,34943082-34943330,34943516-349436... 36 0.054
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 29 4.7
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 29 4.7
11_04_0441 + 17781533-17781775,17782007-17782114,17782386-177824... 29 6.2
06_03_0533 - 21849923-21850231,21851612-21852121 29 6.2
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201 28 8.3
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 28 8.3
>01_06_1153 -
34942608-34942975,34943082-34943330,34943516-34943625,
34944698-34944771,34945237-34945306,34945848-34945947,
34946045-34946120,34946572-34946646,34947067-34947156,
34947238-34947354,34947457-34947567,34947649-34947788,
34947962-34948043,34948224-34948303,34948938-34949046,
34949295-34949417,34949972-34950044,34950338-34950489,
34951029-34951127,34952258-34952383
Length = 807
Score = 35.5 bits (78), Expect = 0.054
Identities = 29/84 (34%), Positives = 40/84 (47%)
Frame = -1
Query: 473 LSCRKSAPWAIFFLSPDRMISAVISTLFSGTK*PTIESLRSASSVVNSKYWKSFARAWTL 294
+S RKS PWAI + +I LFSG K E LR+ +S+ S + R L
Sbjct: 212 VSIRKSPPWAI----DSWGLGCLIYELFSGAKLTRTEDLRNTASIPKS-LLPDYQR--LL 264
Query: 293 TSLPSRSLNLNLAAGSSPCFARPL 222
+S PSR +N + +S F L
Sbjct: 265 SSAPSRRMNPSKLIDNSEFFQNKL 288
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +2
Query: 455 HFSCKITWSKATTDYRKKLQLFLERSEKRPRHIS*AHQREK 577
+FS +I W +T+ +++ F++R+ K H+S A+ E+
Sbjct: 1882 YFSTQIFWKLDSTETSSRMRRFMKRNYKWSEHLSMANNYEE 1922
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 271 KLLEGKEVSVQALAKDFQYFEFTTEEADRKLSIVGHLVPEKRVDITAD-IILSGDKKNIA 447
KL+E +E ++L + + + TEE +++S + HL+ + D A + LS D N++
Sbjct: 183 KLVEDREAKEESLEAEIEKLKQNTEEQAKEISDLKHLLDKAIKDKEATRVELSSDVANLS 242
>11_04_0441 +
17781533-17781775,17782007-17782114,17782386-17782471,
17782546-17782807,17782921-17783120,17783770-17784012,
17784118-17784394,17784625-17784759,17784880-17784960,
17785311-17785406,17785661-17785756,17785834-17785890,
17785967-17786035,17786154-17786240,17786534-17786635,
17786730-17786819,17786900-17786980,17787573-17787653,
17787761-17787856,17787937-17787993,17788093-17788137,
17788218-17788346
Length = 906
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -3
Query: 456 CPVGDIFLVTR*DDISGYIYSLFRDQMTDDRELAVCL-FCCELEILEVFRQSLD 298
CP+ + + ++ SGY S+ ++ + DD E+ L CC E LE+F + LD
Sbjct: 564 CPISNSWAMSSMLSCSGYDESV-QELVDDDSEVWSALPGCCRQETLELFCRILD 616
>06_03_0533 - 21849923-21850231,21851612-21852121
Length = 272
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = -1
Query: 470 SCRKSAPWAIFFLSPDRMISAVISTLFSG-TK*PTI 366
+CRK A ++FF++P++ + ++ L SG K PT+
Sbjct: 144 TCRKLAQESVFFITPEQFYQSHLTPLQSGCCKPPTV 179
>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
Length = 699
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = +1
Query: 568 KRKSEKAGXEISTISQKTAPYFKKIDEDXRREWSKFYQXVTGD 696
K+K ++ E S ++++ + +K +E + E++ FY+ +T D
Sbjct: 250 KKKIKEVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTND 292
>01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 181 GPNTICKGYRLRRNSGRAKQGEDPAAKLRFKLLEGKEVSVQALAKDFQYFEFTTEE 348
GP +G +++R RAK DP L +KLL G ++S A D ++ EE
Sbjct: 849 GPIVPFEG-KVKRKRSRAKVDLDPVTALMWKLLMGPDMSDCAEGMDKDKEKWLNEE 903
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,023,749
Number of Sequences: 37544
Number of extensions: 411034
Number of successful extensions: 917
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -