Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0019
         (854 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)                      36   0.042
SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.042
SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)                31   1.2  
SB_28397| Best HMM Match : DUF1605 (HMM E-Value=6.1)                   30   2.1  
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               29   3.6  
SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
          Length = 695

 Score = 35.9 bits (79), Expect = 0.042
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 551 CXXXVFQSVQEIIEVSFDSP*SLLTRLSCRKSAPWAIFFLSPDRMISAVI 402
           C    +  V+  ++   D P S + RLSC K   WAI +++P+  I   I
Sbjct: 73  CAFMTYDEVKSRLQKHVDKPGSYIFRLSCTKLGQWAIGYVTPEHTILQTI 122


>SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 35.9 bits (79), Expect = 0.042
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 551 CXXXVFQSVQEIIEVSFDSP*SLLTRLSCRKSAPWAIFFLSPDRMISAVI 402
           C    +  V+  ++   D P S + RLSC K   WAI +++P+  I   I
Sbjct: 282 CAFMTYDEVKSRLQKHVDKPGSYIFRLSCTKLGQWAIGYVTPEHTILQTI 331


>SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)
          Length = 450

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = +2

Query: 38  IKSNAVFKVPEPNRYILESSVSLCHSSLGADRVSKLLLDVSPTKFVFLAQTPFVKVIDLE 217
           ++S AV + P P  +   +S  +  S +     S     +SP+   F+AQ+P    +   
Sbjct: 178 VQSPAVMRAPTPAPHPSPASQPVAPSPVCIPVQSPAPNMMSPSPQQFIAQSPAPTSVPTP 237

Query: 218 GTVDVQSKAKTQRP 259
           GT++VQS A    P
Sbjct: 238 GTLNVQSPASILNP 251


>SB_28397| Best HMM Match : DUF1605 (HMM E-Value=6.1)
          Length = 325

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -3

Query: 222 VPSKSITFTNGVWAKKTNLVGETSNSSLETRSAPREE*HRLTDDSRIYRFGSGTLK 55
           +PSK+   +  +W+++  L    S+S  +   APR   H     SR+Y F  GTL+
Sbjct: 155 IPSKNGGESAPLWSQRQELHPPLSDSPCQ---APRYNGHSTITGSRLYYFAMGTLR 207


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 271 KLLEGKEVSVQALAKDFQYFEFTTEEADRKLSIVGHLVPEKRVDITA 411
           KLL  KE  + ALA +    +   +E+D K++ +  L+ EK   I A
Sbjct: 72  KLLGEKEEGIMALADERDRLQGALQESDPKIAEIQGLLSEKETSILA 118


>SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 731

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 235 KQGEDPAAKLRFKLLEGKEVSVQALAKDFQYFEFTTEEADRKL 363
           K+ EDP+ + R +LL G +     LAK  +  E    E + KL
Sbjct: 544 KELEDPSNEERVRLLSGADPEPDILAKKIEELELRLAEKEEKL 586


>SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 186 WAKKTNLVGETSNSSLETRSAPREE 112
           W K  +++ ++SNS+LE  SA RE+
Sbjct: 97  WLKDGHVITDSSNSTLEIESASRED 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,108,421
Number of Sequences: 59808
Number of extensions: 471480
Number of successful extensions: 1004
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)