Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0019
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    35   0.085
X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.        34   0.15 
U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of l...    34   0.15 
U58730-4|AAK84547.1|  565|Caenorhabditis elegans Suppressor of l...    34   0.15 
U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of l...    34   0.15 
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    33   0.20 
Z81516-1|CAB04203.1|  521|Caenorhabditis elegans Hypothetical pr...    28   9.7  

>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
           protein 1 protein.
          Length = 1852

 Score = 34.7 bits (76), Expect = 0.085
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
 Frame = -3

Query: 327 ILEVFRQSLDADLLALQKLEPQLGRWVFALLCTSTVPSKSI---TFTNGVWAKKTNLVGE 157
           +LEVF+Q  D D+L +  ++PQ  R  + +     VP  ++     T G    + +L  +
Sbjct: 215 VLEVFQQITDEDILVI-GMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHK 273

Query: 156 TS-----NSSLETRSAPREE*HRLTDDSRIYRFGSGTL 58
            S     N  L+   A     H LTDD R+ +F   TL
Sbjct: 274 LSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATL 311


>X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.
          Length = 582

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 551 CXXXVFQSVQEIIEVSFDSP*SLLTRLSCRKSAPWAIFFLSPDRMISAVI 402
           C    +  V++ +E     P S + RLSC +   WAI +++PD  I   I
Sbjct: 278 CAFLTYDEVKKRLEKLTKKPGSYIFRLSCTRPGQWAIGYVAPDGKIYQTI 327


>U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform a protein.
          Length = 582

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 551 CXXXVFQSVQEIIEVSFDSP*SLLTRLSCRKSAPWAIFFLSPDRMISAVI 402
           C    +  V++ +E     P S + RLSC +   WAI +++PD  I   I
Sbjct: 278 CAFLTYDEVKKRLEKLTKKPGSYIFRLSCTRPGQWAIGYVAPDGKIYQTI 327


>U58730-4|AAK84547.1|  565|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform b protein.
          Length = 565

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 551 CXXXVFQSVQEIIEVSFDSP*SLLTRLSCRKSAPWAIFFLSPDRMISAVI 402
           C    +  V++ +E     P S + RLSC +   WAI +++PD  I   I
Sbjct: 261 CAFLTYDEVKKRLEKLTKKPGSYIFRLSCTRPGQWAIGYVAPDGKIYQTI 310


>U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform c protein.
          Length = 523

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 551 CXXXVFQSVQEIIEVSFDSP*SLLTRLSCRKSAPWAIFFLSPDRMISAVI 402
           C    +  V++ +E     P S + RLSC +   WAI +++PD  I   I
Sbjct: 261 CAFLTYDEVKKRLEKLTKKPGSYIFRLSCTRPGQWAIGYVAPDGKIYQTI 310


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
           C.elegans RNA polymeraseII largest subunit (ama-1 IV)
           gene, complete cds. ).
          Length = 1859

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
 Frame = -3

Query: 324 LEVFRQSLDADLLALQKLEPQLGRWVFALLCTSTVPSKSI---TFTNGVWAKKTNLVGET 154
           LEVF+Q  D D+L +  ++PQ  R  + +     VP  ++     T G    + +L  + 
Sbjct: 216 LEVFQQITDEDILVI-GMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKL 274

Query: 153 S-----NSSLETRSAPREE*HRLTDDSRIYRFGSGTL 58
           S     N  L+   A     H LTDD R+ +F   TL
Sbjct: 275 SDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATL 311


>Z81516-1|CAB04203.1|  521|Caenorhabditis elegans Hypothetical
           protein F26H9.2 protein.
          Length = 521

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 416 ISAVISTLFSGTK*PTIESLRSASSVVNSKYWKSFARAWTLTSL 285
           +S   S+   G+K  T  S R + S  +SK+W    R W   +L
Sbjct: 20  VSDATSSTSGGSKSKTGRSPRKSISFASSKFWLRLVRPWKWRNL 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,903,225
Number of Sequences: 27780
Number of extensions: 357455
Number of successful extensions: 860
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)