Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0019
         (854 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40730.1 68415.m05024 HEAT repeat-containing protein contains...    33   0.32 
At3g50590.1 68416.m05533 transducin family protein / WD-40 repea...    29   5.2  

>At2g40730.1 68415.m05024 HEAT repeat-containing protein contains
           INTERPRO:IPR000357 HEAT repeat
          Length = 798

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 25/69 (36%), Positives = 35/69 (50%)
 Frame = -1

Query: 473 LSCRKSAPWAIFFLSPDRMISAVISTLFSGTK*PTIESLRSASSVVNSKYWKSFARAWTL 294
           ++ RKS PWAI        +  +I  LFSG+K    E LR+   +  S     + R   L
Sbjct: 212 VAIRKSPPWAIDSWG----LGCLIYELFSGSKLAKTEELRNTVGIPKS-LLPDYQR--LL 264

Query: 293 TSLPSRSLN 267
           +S+PSR LN
Sbjct: 265 SSMPSRRLN 273


>At3g50590.1 68416.m05533 transducin family protein / WD-40 repeat
           family protein contains 3 WD-40 repeats (PF00400); some
           similarity to s-tomosyn isoform (GI:4689231)[Rattus
           norvegicus]; contains non-consensus AT-AC splice sites
           at intron 18
          Length = 1606

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 344 SVVNSKYWKSFARA-WTLTSLPSRSLNLNLAAGSSPCFARPL 222
           +V N+ YW SF R  W + +L    L L     SS  F + L
Sbjct: 336 AVKNTSYWHSFLRTWWVMRTLKIEQLRLEKEGSSSLQFCKVL 377


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,117,394
Number of Sequences: 28952
Number of extensions: 337568
Number of successful extensions: 909
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)