Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0018
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    27   2.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.5  
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    25   7.7  

>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +3

Query: 405 FGDETAKTILQQTKMKSKCTGSACGSAHLPWQCPWLCTPGCPFSIVSNEVAHIVPKQLLC 584
           FG     TI  QT  +++   + CG +       W CT   P+S+ S+E+  +  ++   
Sbjct: 435 FGVCMLSTIFLQTSWQAQAMVAICGLS-------WACTLWIPYSLFSSEIGKLGLRESSG 487

Query: 585 KM 590
           KM
Sbjct: 488 KM 489


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 299  PLHHPSSFNALGIFLFIKDDVSFRSSLYKHFIFTIMRNNGSSHYIF 162
            P+H     NA  I LF K+     SS+  HF++ + + N  S+  F
Sbjct: 1741 PIHTNFDTNADIITLFEKEANEHPSSIALHFVYNVDKENIYSYKFF 1786


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 115 N*KDHSLNH*YGTQSDCRRKYHSDNFKI 32
           N +   +N  YG + +CR KY+   F I
Sbjct: 278 NHETDDMNKVYGFEGECRSKYNERTFNI 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,039
Number of Sequences: 5004
Number of extensions: 52306
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)