Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0018
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0125 - 12531409-12531442,12531577-12531668,12531747-125323...    34   0.091
04_03_0703 - 18870287-18871351,18871542-18871733                       29   2.6  
05_01_0058 + 415145-415210,415888-415906,415971-416083,416495-41...    28   7.9  

>09_03_0125 -
           12531409-12531442,12531577-12531668,12531747-12532337,
           12532454-12532789,12532899-12533156,12533867-12533971,
           12534625-12534702,12535464-12535542,12535649-12535723,
           12535828-12535946,12536042-12537106
          Length = 943

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = +1

Query: 145 FTKFHLKM*CDDPL-----FLMIVKMKCLYNDDLKETSSFIKRKIPK 270
           +  FHLK  CD+ +     F  +    C Y++++   SSFIK ++PK
Sbjct: 799 YCDFHLKFHCDEKMDEYNSFCNVFNELCSYSNEVLSISSFIKTRVPK 845


>04_03_0703 - 18870287-18871351,18871542-18871733
          Length = 418

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 450 KSKCTGSACGSAHLPWQCPWLCTPGC 527
           +++C GSACG+    W  P  C PGC
Sbjct: 256 RARCCGSACGTRRSTWS-P--CPPGC 278


>05_01_0058 +
           415145-415210,415888-415906,415971-416083,416495-416572,
           416731-416975,417083-417188
          Length = 208

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 514 QSQGHCQGKCAEPQADPVHFDFIFVCCKIVFAVSSPK 404
           ++  HC G+ A P + P      F+CC +   V SP+
Sbjct: 120 EAPSHCMGRPA-PDSSPDPLLSQFICCSLAPPVDSPR 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,710,608
Number of Sequences: 37544
Number of extensions: 287392
Number of successful extensions: 598
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)