Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0018
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical pr...    40   0.001
U53141-8|AAA96110.3|  572|Caenorhabditis elegans Prion-like-(q/n...    29   4.1  
Z72502-13|CAA96586.2|  439|Caenorhabditis elegans Hypothetical p...    28   7.1  

>L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical
           protein R05D3.2 protein.
          Length = 737

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = +2

Query: 308 REQIFHNNVREQXXXXXXXXXXXXXXXXXXEKFRRRDSEDYFTADEDEVKVYRISLWLCT 487
           +E+ FHN VR+Q                   + +R+   +   A E++  VYR+S+W+ +
Sbjct: 58  KEKEFHNYVRQQIICMWLFMLLYLFAYWLISRLKRKTEREALYAGEEDYFVYRVSVWISS 117

Query: 488 FALAVSLALHSWLP 529
            A A S+   + LP
Sbjct: 118 TATATSIGSLTLLP 131



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 556 LILYPNSYYVKWLNSSLIQGLWNHXXXXXXXXXXXXXPFAY 678
           L LY  +YY++WL+ SLI  LWN+             PF+Y
Sbjct: 140 LQLYDGNYYLQWLSYSLIGALWNYVFVLSNVSLFVLLPFSY 180


>U53141-8|AAA96110.3|  572|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 13
           protein.
          Length = 572

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +3

Query: 417 TAKTILQQTKMKSKCTGSACGSAHLPWQCPWLCTPGCPFSIVSNEVAHIVPKQ 575
           T + + QQT   + C  S   S     QC   C P C  S V  +   +V  Q
Sbjct: 327 TPQCVQQQTICAAACQPSCQSSCSSNAQCVQACLPSCESSCVQQQQPSVVVVQ 379


>Z72502-13|CAA96586.2|  439|Caenorhabditis elegans Hypothetical
           protein C08B6.3 protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 608 YKVYGITYFYFQIYH 652
           YK+ G+T+FYF I+H
Sbjct: 200 YKLQGMTHFYFYIFH 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,839,800
Number of Sequences: 27780
Number of extensions: 302787
Number of successful extensions: 719
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)