Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0017
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 32 0.086
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 28 1.4
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 1.8
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 27 2.4
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 2.4
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 3.2
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 27 3.2
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 4.3
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 4.3
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 4.3
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe... 26 5.6
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 26 5.6
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 25 7.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 7.5
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 25 7.5
SPCC569.08c |ade5|ade8|phosphoribosylglycinamide formyltransfera... 25 9.9
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 31.9 bits (69), Expect = 0.086
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +2
Query: 350 ATKEALDAKMETXEEKREAYINELRSRLKDHLEGVEKTRLTLEQ--QTAEVYKAIKIR*P 523
A +E + +E +EA +NE R L+ LEG ++ L++ Q + YK + R
Sbjct: 5 AVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQEDSQLQKDYKYDESRAT 64
Query: 524 QLPTSGDENLKKMIERLREHEXQVSQGPRRQP 619
Q T + NL RL E E +V R+P
Sbjct: 65 QEET--ETNLDDEYHRLGEREPKVLVTTSREP 94
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 63 AMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQE 221
A+ ETKST ++ GG A +A P +P P +P P+ E +++
Sbjct: 867 AITPETKST---VNQIMSGGEALAAPVAVPAPIPAPVAEPAPPAAPAKEVVEK 916
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 12 SSDAIQLFRSLCRLKVEAMEVETKSTEIRCQEMSKGGLAYE 134
S D L+ L R + +E E ++ +C E K L YE
Sbjct: 2534 SLDEHDLYHGLWRRRANFLETEVATSHEQCHEWEKAQLVYE 2574
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = +1
Query: 355 QGGSRRQDGDPXGKTRGLHQRAALPSQGSS*GR*EDQVDPGTADRGSVQGHQDKMTTAAD 534
+GG R + G G + L R+ P + S D+ +DR S+ + + D
Sbjct: 96 RGGRRERGGRVHGDSGRLRSRSPSPHEARSRSPYNDE----RSDRRSMSPRYRSRSRSPD 151
Query: 535 KRRREPQEDDRASAR 579
R R P D R+ R
Sbjct: 152 GRSRSPDYDRRSPKR 166
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +2
Query: 410 INELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIKIR*PQLPTSGDENLKKMIERL 574
+ E +++K+ +KTR + EQQT ++ + +K + ++ LKK IE L
Sbjct: 410 LREKAAKVKNDCTSEKKTRQSYEQQTVKIEEQLKFL-----LNKEKKLKKSIEAL 459
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 359 EALDAKMETXEEKREAYINELRSRLKDHLEGVEKTRLTLEQ 481
E L K+++ ++++ INEL R+K + V + T+++
Sbjct: 530 EGLTLKIDSITKEKDRLINELEQRIKSYEVNVSELNGTIDE 570
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.6 bits (56), Expect = 3.2
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +2
Query: 326 EQTNNFIVATKEA-LDAKMETXEEKREAYINELRSRLKDHLEGVEKTRLTLE-QQTAEVY 499
+Q VA ++A +E K E + + + SR+K + +E TRL + Q E Y
Sbjct: 460 KQVEELTVALNSGKMNAIVEAESSKNELWDSMMVSRMKTQEQSIELTRLYKQLQDIEEDY 519
Query: 500 KAIKIR*PQLPTSGDENLKKMIERLRE 580
+ +R Q + L++ +E + +
Sbjct: 520 ENKLMRMEQQWREDVDQLQEYVEEITQ 546
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 135 VILAEPVGVPVPRRADSPEKTPSVEEIQEKLI 230
V L +P+ P P A+S + T S E++ +LI
Sbjct: 182 VSLPQPIAAPAPPSAESSKSTISDEDVAWQLI 213
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 18 DAIQLFRSLCRLKVEAMEVETKSTEIRCQEM 110
DA +FRS+CRL V + K + IR Q M
Sbjct: 388 DAFLVFRSMCRLAVRQTSPD-KVSNIRSQAM 417
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.2 bits (55), Expect = 4.3
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Frame = +1
Query: 367 RRQDGDPXGKTRGLHQRAALPS--QGSS*GR*EDQV-DPGTADRGSVQGHQDKMTTAADK 537
RR+ P G R L R Q S EDQ D R + D + + +
Sbjct: 1389 RRRKTTPEGNRRALRTRTPTNEDIQRSDSKLREDQSRDRTPQSRSFTNENNDNLRSVSRH 1448
Query: 538 RRREPQEDDRASAR 579
RREPQ+ +AR
Sbjct: 1449 TRREPQQAQNLNAR 1462
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/57 (19%), Positives = 30/57 (52%)
Frame = +2
Query: 332 TNNFIVATKEALDAKMETXEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYK 502
T N I++ + + + EE + ELR++++++++ E+ ++ E+Y+
Sbjct: 85 TLNNILSMRTETGSMAKAHEEVSQQINTELRNKIREYIDQTEQQKVVAANAIEELYQ 141
>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 443
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 186 PEKTPSVEEIQEKLIAAEERRRSWKL 263
P+K P+V+E+ E I EE W+L
Sbjct: 19 PKKNPTVDELFEIAIDLEESGDRWRL 44
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.8 bits (54), Expect = 5.6
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +2
Query: 326 EQTNNFIVATKEALDAKMETXEEKREAY-INELRSRLKDHLEGVEKTRLTLEQQTAEVYK 502
EQ F ++++E ++ + K Y +N L S + +E ++ L L++
Sbjct: 337 EQCKQFYISSRE-MEENVPLSASKEFNYKLNALIS-WSNVMESIQVETLVLQKWVGNDEF 394
Query: 503 AIKIR*PQLPTSGDENLKKMIERL 574
+ +R PQ G EN +ER+
Sbjct: 395 DLTMRTPQFNYDGVENTSSFVERI 418
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 25.4 bits (53), Expect = 7.5
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -3
Query: 652 GWPLSSCWNFSWLPARTLRNLXLMFAQTLDHLLEVLVAACRQLWSSYLDGLVHFRGLLFQ 473
GW S+C +F A T + F L + V++ A + Y DG+ +R +
Sbjct: 72 GWE-SACHSFEIRFASTFHRIPFQFLY-LAVIATVIILAS---YYGYFDGVPAWRSVHHY 126
Query: 472 GQPGLLNALK 443
G+ LLN +K
Sbjct: 127 GEDVLLNYIK 136
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 344 IVATKEALDAKMETXEEKREAYINELRSRLKDHLEGVEK 460
I+A + L A+ E +E+ E +NE R+K+ E +K
Sbjct: 1592 ILAARSELVAEKEKTKEELENQLNEKSQRIKELEEQAQK 1630
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +2
Query: 323 SEQTNNFIVATKEALDAKMETXEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYK 502
SEQT A + + K E E L++ KD+ ++K LE++ + K
Sbjct: 391 SEQTQLVEEALTKVMKEKYREKENNLELLETNLKTHHKDYKHALKKRITALEEEKNRLIK 450
Query: 503 AI 508
I
Sbjct: 451 EI 452
>SPCC569.08c |ade5|ade8|phosphoribosylglycinamide
formyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 207
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 117 GGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLIAAE 239
G + + VI A G P+ + T S+E ++EK+ AAE
Sbjct: 151 GAMVHWVIAAVDEGKPIIVQEVPILSTDSIEALEEKIHAAE 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,446
Number of Sequences: 5004
Number of extensions: 35285
Number of successful extensions: 140
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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