Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0017
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0463 + 3502708-3503535 34 0.089
11_06_0289 - 21969248-21973516 31 0.83
11_06_0185 + 21018045-21022307 31 0.83
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 31 0.83
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316... 31 1.1
01_06_0042 - 25911662-25911736,25912409-25912607,25913275-259133... 29 2.5
08_02_0921 - 22640125-22640268,22640349-22640423,22640496-226407... 28 5.9
05_01_0242 + 1804183-1806096 28 7.7
01_06_1104 - 34551466-34551572,34552019-34553057 28 7.7
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 28 7.7
>07_01_0463 + 3502708-3503535
Length = 275
Score = 34.3 bits (75), Expect = 0.089
Identities = 18/58 (31%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Frame = +2
Query: 326 EQTNN--FIVATKEALDAKMETXEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAE 493
E+TN+ + A E +D K++ + K+E + +L+ +LK+ LEG K++ +E++ A+
Sbjct: 180 EKTNDPAKLKAKLEKIDTKIQDLQAKKEDILRQLKEQLKEELEG-GKSKNAIEEKPAQ 236
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 31.1 bits (67), Expect = 0.83
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 392 EKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIK 511
E + I +L RLKDH+E EKT+ EQ E A++
Sbjct: 398 EWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVEEETAVR 437
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 31.1 bits (67), Expect = 0.83
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 392 EKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIK 511
E + I +L RLKDH+E EKT+ EQ E A++
Sbjct: 398 EWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVEEETAVR 437
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 31.1 bits (67), Expect = 0.83
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Frame = +1
Query: 289 DGQDRGGVPHPQRADE*LHRRHQGGSRRQDGDPXGKTRGLHQRAALPSQGSS*GR*E--D 462
DG+ GG DE G + DGD G+TR + +R + +G G+ E +
Sbjct: 90 DGESEGG-----EEDEHDGESEGGEEDKNDGDGGGQTRRMGKRKTIVQKGML-GKPEPSE 143
Query: 463 QVDPGT--ADRGSV-QGHQDKMTTAADKRRREPQEDDRAS 573
+ G+ A + S+ H D + KR R QE RAS
Sbjct: 144 KTRGGSQRAKKRSIGDDHADDIEEPPPKRSRSKQESSRAS 183
>03_06_0656 -
35330109-35331011,35331154-35331360,35331455-35331632,
35331726-35332221,35332889-35333033
Length = 642
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Frame = +2
Query: 356 KEALDAKMETXEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIKIR*PQLPT 535
KEA A++ EE+++ + E L++ + +E ++ + TAEV++ +++ +
Sbjct: 259 KEAEKAEVLKEEERKDMTLEEYEKVLEEKRKALEDSKSEGRKVTAEVFEGMQLL--EKKK 316
Query: 536 SGDENLKKMIE-RLREHEXQVSQGPRR-------QPGEVPAARERPSQEKLQ 667
DEN K E R+ + + P+ +P + A R RP ++Q
Sbjct: 317 LDDENASKKAENEQRKEPAKQVKAPKAINLNDLLKPADGQAYRPRPPPRRVQ 368
>01_06_0042 -
25911662-25911736,25912409-25912607,25913275-25913348,
25913431-25913580,25913666-25913821,25915378-25915464,
25915706-25915765,25915878-25916414,25917292-25917585
Length = 543
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +1
Query: 295 QDRGGVPHPQRADE*LHRRHQGGSRRQDGDPXGKTRGLHQRAALPSQG 438
+DRGG HP+RA E R +R +GD R +R SQG
Sbjct: 32 EDRGGHRHPERAGEEQERAED--DKRDEGDGERDAREDKERREGDSQG 77
>08_02_0921 -
22640125-22640268,22640349-22640423,22640496-22640757,
22642286-22642578,22642609-22642812,22643216-22643901,
22643958-22644033
Length = 579
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 284 EQWRPSY*LPATSPLFSCNEL-LLDLFDGRSLFG*VGATGNRYAHRLREYHLVRQTALRH 108
E W P+Y S LFSC EL LDL R +G G +LR + + + +
Sbjct: 105 ELWFPTYNFQLHSCLFSCRELACLDLDSCRLPPARMGFEGFPNLKKLRLHEVTLPEHMGN 164
Query: 107 LLAA 96
+LAA
Sbjct: 165 MLAA 168
>05_01_0242 + 1804183-1806096
Length = 637
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 515 LS*WPCTLPRSAVPGSTWSSQRPQDDP*DGSAAR 414
LS P T R+ +P ++RP+ DP G +AR
Sbjct: 19 LSTAPATSHRNKIPADPSRTERPRPDPGSGDSAR 52
>01_06_1104 - 34551466-34551572,34552019-34553057
Length = 381
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +3
Query: 93 IRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLIA 233
+RC GG+++ V+LA G +++D+P + + EE +E+LIA
Sbjct: 287 LRCINNVLGGMSF-VLLARLTG---SQKSDAPAASATAEEEKERLIA 329
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 566 ERLREHEXQVSQGPRRQPGEVPAA-RERPSQEK 661
+ L H+ ++ GP R PG VP +RP Q K
Sbjct: 27 DALPYHKADLNSGPVRHPGAVPFVWEQRPGQPK 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,037,984
Number of Sequences: 37544
Number of extensions: 308141
Number of successful extensions: 1216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -