Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0016
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.4  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   9.4  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 90  SSRWGLRGGCPAILPSYPGRESQPAQLQ 7
           SSR  ++ GCP  L ++P  ++Q   LQ
Sbjct: 121 SSRLTIKAGCPMNLENFP-MDTQRCPLQ 147


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 583  FIDCCQRNLGCRVDRKNLLVELG 651
            F  C QRNL      K  +VELG
Sbjct: 1005 FFGCRQRNLDLYRQEKEEMVELG 1027


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 66  HLEDPNEKIPESDPNDKTPTAGLRSEKIVPIRAEPKLFDSY 188
           H  D ++    +D N  + T  +  + + PI++EP   D+Y
Sbjct: 226 HESDNSDYSHTTDENRHSSTLDIDHKMLTPIKSEP--IDAY 264



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 79  PTRRSLNRILMTRPQPLACVRRK*SPFARNLNFSIATTMDAVT 207
           PT+R++++I   +P+P     +    +   LN ++ T + A T
Sbjct: 27  PTQRTMSKIQWRKPKPAMVEEKTQLRYLEELN-ALRTELGAST 68


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 553 GFHIEDYCLNFIDCCQRNLGC 615
           G+ +     +FID  Q+NL C
Sbjct: 125 GYFLNSESKDFIDFIQKNLQC 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,025
Number of Sequences: 438
Number of extensions: 5756
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)