Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0016
(763 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17770.1 68417.m02652 glycosyl transferase family 20 protein ... 60 2e-09
At1g60140.1 68414.m06775 glycosyl transferase family 20 protein ... 60 2e-09
At1g68020.2 68414.m07771 glycosyl transferase family 20 protein ... 59 3e-09
At1g68020.1 68414.m07770 glycosyl transferase family 20 protein ... 59 3e-09
At2g18700.1 68415.m02178 glycosyl transferase family 20 protein ... 58 6e-09
At1g23870.1 68414.m03011 glycosyl transferase family 20 protein ... 58 8e-09
At1g70290.1 68414.m08087 trehalose-6-phosphate synthase, putativ... 56 3e-08
At1g06410.1 68414.m00678 glycosyl transferase family 20 protein ... 56 3e-08
At1g16980.1 68414.m02062 alpha, alpha-trehalose-phosphate syntha... 55 6e-08
At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate syntha... 50 1e-06
At4g27550.1 68417.m03958 alpha, alpha-trehalose-phosphate syntha... 50 2e-06
At1g17000.1 68414.m02063 alpha, alpha-trehalose-phosphate syntha... 43 3e-04
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami... 29 4.5
At1g51530.1 68414.m05800 RNA recognition motif (RRM)-containing ... 28 7.8
>At4g17770.1 68417.m02652 glycosyl transferase family 20 protein /
trehalose-phosphatase family protein contains Pfam
profile: PF02358 trehalose-phosphatase
Length = 862
Score = 60.1 bits (139), Expect = 2e-09
Identities = 30/81 (37%), Positives = 45/81 (55%)
Frame = +2
Query: 266 WKAYIKINEEFAEKTVHALHLLNKQKKDKNGSPPIVWVHDYHLMLAANWIRQRAEEDEIK 445
W+AY+ +N+ FA+K + + + VWVHDYHLM+ ++R+R +
Sbjct: 177 WQAYLSVNKIFADKVMEVI----------SPDDDFVWVHDYHLMVLPTFLRKRFN----R 222
Query: 446 CKLAFFLHIPFPPWDIFRLFP 508
KL FFLH PFP +I+R P
Sbjct: 223 VKLGFFLHSPFPSSEIYRTLP 243
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +1
Query: 499 TVPGSDEVLQGILGCDMVGFHIEDYCLNFIDCCQRNLGCRVDRK 630
T+P +E+L+ +L D++GFH DY +F+ CC R LG K
Sbjct: 241 TLPVRNELLRALLNADLIGFHTFDYARHFLSCCSRMLGLSYQSK 284
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +3
Query: 132 LRSEKIVPIRAEPKLFDSYYNGCCNGTFWPLFHSM 236
L + K VP P+LF YY+G C WPLFH M
Sbjct: 127 LENFKCVPAYIPPELFTKYYHGFCKQHLWPLFHYM 161
>At1g60140.1 68414.m06775 glycosyl transferase family 20 protein /
trehalose-phosphatase family protein contains Pfam
profile: PF02358 trehalose-phosphatase
Length = 861
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/81 (37%), Positives = 48/81 (59%)
Frame = +2
Query: 266 WKAYIKINEEFAEKTVHALHLLNKQKKDKNGSPPIVWVHDYHLMLAANWIRQRAEEDEIK 445
W+AY+ N+ FA+K + ++L ++D +W+HDYHLM+ ++R+R +
Sbjct: 177 WQAYVSANKIFADKVMGVINL----EED------YIWIHDYHLMVLPTFLRRRFH----R 222
Query: 446 CKLAFFLHIPFPPWDIFRLFP 508
KL FFLH PFP +I+R P
Sbjct: 223 VKLGFFLHSPFPSSEIYRTLP 243
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/66 (37%), Positives = 38/66 (57%)
Frame = +1
Query: 499 TVPGSDEVLQGILGCDMVGFHIEDYCLNFIDCCQRNLGCRVDRKNLLVELGXSHHLRETA 678
T+P +E+L+G+L CD++GFH DY +F+ CC R LG + K + L +L T
Sbjct: 241 TLPVREELLRGLLNCDLIGFHTFDYARHFLSCCCRMLGLEYESKRGHIAL---DYLGRTV 297
Query: 679 YRSELP 696
+ LP
Sbjct: 298 FLKILP 303
>At1g68020.2 68414.m07771 glycosyl transferase family 20 protein /
trehalose-phosphatase family protein similar to
SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
[UDP-forming] 56 kDa subunit (EC 2.4.1.15)
(Trehalose-6-phosphate synthase) {Saccharomyces
cerevisiae}; contains Pfam profile: PF02358
trehalose-phosphatase
Length = 860
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/81 (34%), Positives = 45/81 (55%)
Frame = +2
Query: 266 WKAYIKINEEFAEKTVHALHLLNKQKKDKNGSPPIVWVHDYHLMLAANWIRQRAEEDEIK 445
W+AY+ +N+ FA++ + + N VW+HDYHLM+ ++R+R +
Sbjct: 185 WQAYVSVNKIFADRIMEVI----------NPEDDFVWIHDYHLMVLPTFLRKRFN----R 230
Query: 446 CKLAFFLHIPFPPWDIFRLFP 508
KL FFLH PFP +I++ P
Sbjct: 231 VKLGFFLHSPFPSSEIYKTLP 251
Score = 47.2 bits (107), Expect = 1e-05
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +1
Query: 499 TVPGSDEVLQGILGCDMVGFHIEDYCLNFIDCCQRNLGCRVDRK 630
T+P +E+L+ +L D++GFH DY +F+ CC R LG + K
Sbjct: 249 TLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESK 292
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 132 LRSEKIVPIRAEPKLFDSYYNGCCNGTFWPLFHSM 236
L S K VP L+ YY+G C WPLFH M
Sbjct: 135 LESFKCVPTFLPLDLYTRYYHGFCKQQLWPLFHYM 169
>At1g68020.1 68414.m07770 glycosyl transferase family 20 protein /
trehalose-phosphatase family protein similar to
SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
[UDP-forming] 56 kDa subunit (EC 2.4.1.15)
(Trehalose-6-phosphate synthase) {Saccharomyces
cerevisiae}; contains Pfam profile: PF02358
trehalose-phosphatase
Length = 700
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/81 (34%), Positives = 45/81 (55%)
Frame = +2
Query: 266 WKAYIKINEEFAEKTVHALHLLNKQKKDKNGSPPIVWVHDYHLMLAANWIRQRAEEDEIK 445
W+AY+ +N+ FA++ + + N VW+HDYHLM+ ++R+R +
Sbjct: 185 WQAYVSVNKIFADRIMEVI----------NPEDDFVWIHDYHLMVLPTFLRKRFN----R 230
Query: 446 CKLAFFLHIPFPPWDIFRLFP 508
KL FFLH PFP +I++ P
Sbjct: 231 VKLGFFLHSPFPSSEIYKTLP 251
Score = 47.2 bits (107), Expect = 1e-05
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +1
Query: 499 TVPGSDEVLQGILGCDMVGFHIEDYCLNFIDCCQRNLGCRVDRK 630
T+P +E+L+ +L D++GFH DY +F+ CC R LG + K
Sbjct: 249 TLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESK 292
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 132 LRSEKIVPIRAEPKLFDSYYNGCCNGTFWPLFHSM 236
L S K VP L+ YY+G C WPLFH M
Sbjct: 135 LESFKCVPTFLPLDLYTRYYHGFCKQQLWPLFHYM 169
>At2g18700.1 68415.m02178 glycosyl transferase family 20 protein /
trehalose-phosphatase family protein similar to
trehalose-6-phosphate synthase SL-TPS/P [Selaginella
lepidophylla] GI:4100325; contains Pfam profiles
PF00982: Glycosyltransferase family 20, PF02358:
Trehalose-phosphatase
Length = 862
Score = 58.0 bits (134), Expect = 6e-09
Identities = 31/86 (36%), Positives = 43/86 (50%)
Frame = +2
Query: 251 FLADHWKAYIKINEEFAEKTVHALHLLNKQKKDKNGSPPIVWVHDYHLMLAANWIRQRAE 430
F +W+AY +N+ FA+K L N VW+HDYHLM+ ++R R
Sbjct: 163 FDRSNWRAYTTVNKIFADKIFEVL----------NPDDDYVWIHDYHLMILPTFLRNRFH 212
Query: 431 EDEIKCKLAFFLHIPFPPWDIFRLFP 508
+ KL FLH PFP +I+R P
Sbjct: 213 ----RIKLGIFLHSPFPSSEIYRTLP 234
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +1
Query: 499 TVPGSDEVLQGILGCDMVGFHIEDYCLNFIDCCQRNLGCRVDRK 630
T+P DE+L+G L CD+VGFH DY +F+ CC R LG + K
Sbjct: 232 TLPVRDEILKGFLNCDLVGFHTFDYARHFLSCCSRMLGLDYESK 275
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 132 LRSEKIVPIRAEPKLFDSYYNGCCNGTFWPLFH 230
L + VP L + YY+G C WP+FH
Sbjct: 118 LEKFQCVPTFLPSDLLNKYYHGFCKHYLWPIFH 150
>At1g23870.1 68414.m03011 glycosyl transferase family 20 protein /
trehalose-phosphatase family protein contains Pfam
profile: PF02358 trehalose-phosphatase
Length = 867
Score = 57.6 bits (133), Expect = 8e-09
Identities = 28/81 (34%), Positives = 44/81 (54%)
Frame = +2
Query: 266 WKAYIKINEEFAEKTVHALHLLNKQKKDKNGSPPIVWVHDYHLMLAANWIRQRAEEDEIK 445
W+AY+ N+ F+++ + + N VW+HDYHLM+ ++R+R +
Sbjct: 177 WQAYVSANKIFSDRVMEVI----------NPEEDYVWIHDYHLMVLPTFLRKRFN----R 222
Query: 446 CKLAFFLHIPFPPWDIFRLFP 508
KL FFLH PFP +I+R P
Sbjct: 223 IKLGFFLHSPFPSSEIYRTLP 243
Score = 54.0 bits (124), Expect = 1e-07
Identities = 20/44 (45%), Positives = 30/44 (68%)
Frame = +1
Query: 499 TVPGSDEVLQGILGCDMVGFHIEDYCLNFIDCCQRNLGCRVDRK 630
T+P D++L+G+L CD++GFH DY +F+ CC R LG + K
Sbjct: 241 TLPVRDDLLRGLLNCDLIGFHTFDYARHFLSCCSRMLGLDYESK 284
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 150 VPIRAEPKLFDSYYNGCCNGTFWPLFHSM 236
VP ++ + +Y G C WPLFH M
Sbjct: 133 VPTFLPKEMQEKFYLGFCKHHLWPLFHYM 161
>At1g70290.1 68414.m08087 trehalose-6-phosphate synthase, putative
similar to Alpha,alpha-trehalose-phosphate synthase
[UDP-forming] (EC 2.4.1.15) (Trehalose-6-phosphate
synthase) from {Kluyveromyces lactis} SP|Q07158,
{Saccharomyces cerevisiae} SP|Q00764; contains Pfam
profiles PF00982: Glycosyltransferase family 20,
PF02358: Trehalose-phosphatase
Length = 856
Score = 56.0 bits (129), Expect = 3e-08
Identities = 21/44 (47%), Positives = 30/44 (68%)
Frame = +1
Query: 499 TVPGSDEVLQGILGCDMVGFHIEDYCLNFIDCCQRNLGCRVDRK 630
T+P DE+L+G+L CD++GFH DY +F+ CC R LG + K
Sbjct: 239 TLPVRDEILRGLLNCDLIGFHTFDYARHFLSCCSRMLGLDYESK 282
Score = 54.4 bits (125), Expect = 8e-08
Identities = 27/81 (33%), Positives = 43/81 (53%)
Frame = +2
Query: 266 WKAYIKINEEFAEKTVHALHLLNKQKKDKNGSPPIVWVHDYHLMLAANWIRQRAEEDEIK 445
W+AY+ N+ F+++ + + N VW+ DYHLM+ ++R+R +
Sbjct: 175 WQAYVSANKIFSDRVMEVI----------NPEDDYVWIQDYHLMVLPTFLRKRFN----R 220
Query: 446 CKLAFFLHIPFPPWDIFRLFP 508
KL FFLH PFP +I+R P
Sbjct: 221 IKLGFFLHSPFPSSEIYRTLP 241
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 171 KLFDSYYNGCCNGTFWPLFHSM 236
+L + +Y G C WPLFH M
Sbjct: 138 ELQEMFYLGFCKHQLWPLFHYM 159
>At1g06410.1 68414.m00678 glycosyl transferase family 20 protein /
trehalose-phosphatase family protein contains Pfam
profile: PF02358 trehalose-phosphatase
Length = 851
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/81 (33%), Positives = 43/81 (53%)
Frame = +2
Query: 266 WKAYIKINEEFAEKTVHALHLLNKQKKDKNGSPPIVWVHDYHLMLAANWIRQRAEEDEIK 445
W+AY+ N+ F +K + + N VW+HDYHLM+ ++R+R +
Sbjct: 175 WEAYVATNKLFFQKVIEVI----------NPDDDFVWIHDYHLMVLPTFLRRRFN----R 220
Query: 446 CKLAFFLHIPFPPWDIFRLFP 508
++ FFLH PFP +I+R P
Sbjct: 221 IRMGFFLHSPFPSSEIYRSLP 241
Score = 46.0 bits (104), Expect = 3e-05
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +1
Query: 499 TVPGSDEVLQGILGCDMVGFHIEDYCLNFIDCCQRNLGCRVDRK 630
++P +E+L+ +L D++GFH DY +F+ CC R LG K
Sbjct: 239 SLPVREEILKALLNSDLIGFHTFDYARHFLTCCSRMLGLEYQSK 282
Score = 35.5 bits (78), Expect = 0.039
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +3
Query: 96 ESDPNDKTPTAGLRSEKIVPIRAEPKLFDSYYNGCCNGTFWPLFHSM 236
+S+ D L K VP P L +Y+G C WPLFH M
Sbjct: 113 DSNEQDDVAQILLDKFKCVPTFFPPDLQSKFYDGFCKRQIWPLFHYM 159
>At1g16980.1 68414.m02062 alpha, alpha-trehalose-phosphate synthase,
UDP-forming, putative / trehalose-6-phosphate synthase,
putative / UDP-glucose-glucosephosphate
glucosyltransferase, putative similar to
trehalose-6-phosphate synthase SL-TPS/P [Selaginella
lepidophylla] GI:4100325; contains Pfam profiles
PF00982: Glycosyltransferase family 20, PF02358:
Trehalose-phosphatase
Length = 821
Score = 54.8 bits (126), Expect = 6e-08
Identities = 26/64 (40%), Positives = 32/64 (50%)
Frame = +3
Query: 45 WVGWPGIHLEDPNEKIPESDPNDKTPTAGLRSEKIVPIRAEPKLFDSYYNGCCNGTFWPL 224
WVGWPG+ + D EK T L K +P+ +FD YYNG CNG WP+
Sbjct: 56 WVGWPGVDVHDEIEK--------NALTESLAEMKCIPVFLNG-VFDQYYNGYCNGILWPI 106
Query: 225 FHSM 236
H M
Sbjct: 107 LHHM 110
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +2
Query: 368 IVWVHDYHLMLAANWIRQRAEEDEIKCKLAFFLHIPFPPWDIFRLFPGLMKFCR 529
IVW HDYHLM +++ E K K+ +FLH PFP ++++ P + R
Sbjct: 151 IVWCHDYHLMFLPQYLK----EYNNKIKVGWFLHSPFPSSEVYKTLPSRSELLR 200
Score = 41.1 bits (92), Expect = 8e-04
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +1
Query: 499 TVPGSDEVLQGILGCDMVGFHIEDYCLNFIDCCQRNLG 612
T+P E+L+ IL D++GFH D+ +F+ C R LG
Sbjct: 191 TLPSRSELLRAILAADLLGFHTYDFARHFLSTCTRILG 228
>At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate synthase,
UDP-forming, putative / trehalose-6-phosphate synthase,
putative / UDP-glucose-glucosephosphate
glucosyltransferase, putative similar to
trehalose-6-phosphate synthase SL-TPS/P [Selaginella
lepidophylla] GI:4100325; contains Pfam profiles
PF00982: Glycosyltransferase family 20, PF02358:
Trehalose-phosphatase
Length = 942
Score = 50.4 bits (115), Expect = 1e-06
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +3
Query: 36 QGNWVGWPGIHLEDPNEKIPESDPNDKTPTAGLRSEKIVPIRAEPKLFDSYYNGCCNGTF 215
+ W+GW G+++ D + K + L ++ +P+ + ++ YYNG CN
Sbjct: 133 EARWIGWAGVNVPD--------EVGQKALSKALAEKRCIPVFLDEEIVHQYYNGYCNNIL 184
Query: 216 WPLFH 230
WPLFH
Sbjct: 185 WPLFH 189
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/54 (38%), Positives = 28/54 (51%)
Frame = +2
Query: 368 IVWVHDYHLMLAANWIRQRAEEDEIKCKLAFFLHIPFPPWDIFRLFPGLMKFCR 529
+VW HDYHLM ++ E K K+ +FLH PFP +I R P + R
Sbjct: 232 VVWCHDYHLMFLPKCLK----EYNSKMKVGWFLHTPFPSSEIHRTLPSRSELLR 281
Score = 44.4 bits (100), Expect = 8e-05
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +1
Query: 499 TVPGSDEVLQGILGCDMVGFHIEDYCLNFIDCCQRNLG 612
T+P E+L+ +L D+VGFH DY +F+ C R LG
Sbjct: 272 TLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILG 309
>At4g27550.1 68417.m03958 alpha, alpha-trehalose-phosphate synthase,
UDP-forming, putative / trehalose-6-phosphate synthase,
putative / UDP-glucose-glucosephosphate
glucosyltransferase, putative similar to
trehalose-6-phosphate synthase SL-TPS/P [Selaginella
lepidophylla] GI:4100325; contains Pfam profiles
PF00982: Glycosyltransferase family 20, PF02358:
Trehalose-phosphatase
Length = 795
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = +3
Query: 45 WVGWPGIHLEDPNEKIPESDPNDKTPTAGLRSEKIVPIRAEPKLFDSYYNGCCNGTFWPL 224
W+GWPG+ + D K KT + L + +P+ E ++ D YYNG CN WP+
Sbjct: 48 WIGWPGVDVHDAIGK--------KTLSITLAEKGCIPVFLE-EVCDQYYNGYCNNILWPI 98
Query: 225 FH 230
FH
Sbjct: 99 FH 100
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +2
Query: 368 IVWVHDYHLMLAANWIRQRAEEDEIKCKLAFFLHIPFPPWDIFRLFP 508
+VW HDYH+ML +++ E K K+ +FLH PFP ++++ P
Sbjct: 143 VVWCHDYHVMLLPQYLK----EYNSKMKVGWFLHTPFPSSEMYKTLP 185
Score = 38.3 bits (85), Expect = 0.006
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 499 TVPGSDEVLQGILGCDMVGFHIEDYCLNFIDCCQRNLGCRVDRKNLL 639
T+P ++L+ +L D+VGFH D+ +F++ C LG + ++
Sbjct: 183 TLPSRSDLLRSVLTADLVGFHTYDFARHFLNACMCILGVEATSEGIV 229
>At1g17000.1 68414.m02063 alpha, alpha-trehalose-phosphate synthase,
UDP-forming, putative / trehalose-6-phosphate synthase,
putative / UDP-glucose-glucosephosphate
glucosyltransferase, putative similar to
trehalose-6-phosphate synthase SL-TPS/P [Selaginella
lepidophylla] GI:4100325, GI:4468259 from (Pichia
angusta); contains Pfam profiles PF00982:
Glycosyltransferase family 20, PF02358:
Trehalose-phosphatase
Length = 730
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +2
Query: 368 IVWVHDYHLMLAANWIRQRAEEDEIKCKLAFFLHIPFPPWDIFRLFPGLMKFCR 529
IVW DYHLM +++ E K K+ +FLH PFP +I++ P + R
Sbjct: 129 IVWCQDYHLMFLPQYLK----EYNNKIKVGWFLHSPFPSSEIYKTLPSRSELLR 178
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 499 TVPGSDEVLQGILGCDMVGFHIEDYCLNFIDCCQRNLG 612
T+P E+L+ +L D++ FH D+ +F++ C R LG
Sbjct: 169 TLPSRSELLRSVLAADLISFHTYDFARHFVNTCTRILG 206
Score = 37.5 bits (83), Expect = 0.010
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 132 LRSEKIVPIRAEPKLFDSYYNGCCNGTFWPLFHSM 236
L K +P+ ++FD YYNG NG WP+ H M
Sbjct: 55 LAEMKCIPVFLN-EVFDQYYNGYSNGILWPILHHM 88
>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
protein contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 1307
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 290 EEFAEKTVHALHLLNKQKKDKNGSPPIVWVHDYH 391
E +T+ L ++KKDKN PP H +H
Sbjct: 1256 ESECAQTMQQFFQLRRKKKDKNSDPPTPTDHHHH 1289
>At1g51530.1 68414.m05800 RNA recognition motif (RRM)-containing
protein
Length = 391
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = -2
Query: 144 SPNAGQRLGSCH*DP---IQGSSRWGLRGG 64
SPN QR+ + H P IQGS ++G+ GG
Sbjct: 129 SPNQQQRMIATHGSPVSNIQGSGQFGIEGG 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,586,604
Number of Sequences: 28952
Number of extensions: 422719
Number of successful extensions: 1189
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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