Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0015
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 65 8e-12
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ... 31 0.15
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 3.3
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz... 26 3.3
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 26 4.4
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 26 4.4
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 25 7.7
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 25 7.7
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 7.7
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 7.7
>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 64.9 bits (151), Expect = 8e-12
Identities = 27/87 (31%), Positives = 49/87 (56%)
Frame = +2
Query: 257 HNQFINEIRDIHQVLKERTATAYKTFNSIPGYFCNPIDGSMFAYPRIEIPVEAQLEAKKL 436
++ FI E+ +IH+ L+ + Y+ + C G+M+ +P + +P + AK
Sbjct: 384 YDLFIKEVDEIHEALRLQCRQLYEGTKRMKRVSCLEPHGAMYLHPSVSLPEKLITTAKAQ 443
Query: 437 NMSPDEFYCLRLLEETGVCVIPGTDSG 517
+ PDEFY + LL+ +G+CV+PG+ G
Sbjct: 444 KIQPDEFYAIELLKRSGICVVPGSGFG 470
Score = 57.2 bits (132), Expect = 2e-09
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 FHSFKKVMFEMGAP-----YSRMELASFLTASKGWAAECGLRSGYVELLHLQPSVQKTFN 167
FHSF++ + E+ + ++ L S + SKG ECG R GY++++++ +
Sbjct: 294 FHSFRRKLGELREKEPDNHWDQVSLISVNSVSKGQFGECGQRGGYLDVVNIPEPAKDQIL 353
Query: 168 IMRSVMQCPSVLGQCILDCVMKPPSPGKP 254
+ ++ CP V GQ ++D ++ PP PG P
Sbjct: 354 KLATIDICPPVAGQLLVDMLVNPPKPGDP 382
>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 392
Score = 30.7 bits (66), Expect = 0.15
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +2
Query: 146 ISAKNLQYNEVCHAVPLGFGTMHFGLRDEASVSRKTPHNQFINEIR 283
+SAKN + + A+PL +G +GLR++ S++ T N+F+N +
Sbjct: 232 VSAKN---HNLIEALPLSYG---YGLREKESIAVDTLTNRFVNSFK 271
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 539 KWNDPGSCPNPYXGSHTLQFPPTA*GSRTHQD 444
K+ PGS + Y + TL+ P A GS+ H +
Sbjct: 347 KFRPPGSTISSYSSASTLRRLPRAPGSKVHAE 378
>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
L35|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 26.2 bits (55), Expect = 3.3
Identities = 19/102 (18%), Positives = 44/102 (43%)
Frame = +2
Query: 137 SPAISAKNLQYNEVCHAVPLGFGTMHFGLRDEASVSRKTPHNQFINEIRDIHQVLKERTA 316
S A++ L+Y +C+++P+ T+++ A + R P I+ + +
Sbjct: 29 SCALAFLTLRYTLLCYSIPIHIHTVNYLAFTIARMKRVWPRIPTISNVCRARSIYSAAQE 88
Query: 317 TAYKTFNSIPGYFCNPIDGSMFAYPRIEIPVEAQLEAKKLNM 442
AY++ + + + + A +E P E E ++L +
Sbjct: 89 NAYRSSVKLIQEYSEKVHKKLQA-KLLENPSETSPEIERLQV 129
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 209 LSQNRGALHDRPHYIEGFLH*WLEMQ*LHVSRPQAT 102
L++++ L + PH I GFLH + M+ ++ PQ +
Sbjct: 555 LNEDQTVLGELPHQIRGFLHNFSLMKISGMAYPQCS 590
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 248 KTPHNQFINEIRDIHQVLKERTATAYKTFNSIPGYFCNPIDGSMFAY 388
K+ +++ INE D+ L+E+ AT T + DG+++AY
Sbjct: 240 KSDNDKDINE--DLESKLREKKATVLSTNARFSLLYVGTADGTVYAY 284
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +2
Query: 212 HFGLRDEASVSRKTPHNQFINEIRDIHQVLKERTATAYKTFN 337
H + D S+ + + QF+ RD+ ++ E +TA N
Sbjct: 458 HISVTDMDSIEKSNLNRQFLFRPRDVGKLKSECASTAVSIMN 499
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 130 SSTYPDLKPHSAAQPFEAVK 71
SS YP+L PHS + E+ K
Sbjct: 48 SSPYPNLPPHSRSSSLESKK 67
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.0 bits (52), Expect = 7.7
Identities = 16/73 (21%), Positives = 34/73 (46%)
Frame = +2
Query: 143 AISAKNLQYNEVCHAVPLGFGTMHFGLRDEASVSRKTPHNQFINEIRDIHQVLKERTATA 322
A+ + N +++++ H + H+G +A S +TP + E+ D +
Sbjct: 1041 AMPSLNERFSQMEHILKSSVVESHYG---DAKFSHRTPSLDILKELID----------SK 1087
Query: 323 YKTFNSIPGYFCN 361
Y F+ +P +FC+
Sbjct: 1088 YTVFDVLPAFFCH 1100
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 7.7
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Frame = +3
Query: 60 LASFLTASKGWAAECGLRSGYVELLHLQPSVQKTF--NIMR--SVMQCPSVLGQCILDCV 227
LAS ++ + ++ GL SG LL P+ TF +++R S+ S +
Sbjct: 394 LASIISNAYIATSKSGLNSGVSTLL-ASPTSSSTFVTSLLRRSSIDGSASSSSASLAVPT 452
Query: 228 MKPPSPGKPH--TISSSMRLETFTKY*RNALQPLTKPSTQYRDTSAIQSTVQCS 383
+ + G H T ++ E FT+Y + P+T S T A ++VQ S
Sbjct: 453 VSSSTTGSLHYKTTTTVWVTEVFTRYLGDDSTPVTSSSIFSTATEATDTSVQTS 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,005
Number of Sequences: 5004
Number of extensions: 55903
Number of successful extensions: 165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -