Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0014
         (860 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   1.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   4.1  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   5.4  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.5  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   9.5  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   9.5  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 100 RVDKNKIYLFDCNMWFHIII 159
           R D    +LF C+  FHI+I
Sbjct: 660 RADNPGYWLFHCHFLFHIVI 679


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/49 (28%), Positives = 18/49 (36%)
 Frame = +2

Query: 203  NCGKLPRYKIPELTLDGTTV*NTTAAPKTWHPSWRI*RRADWSPDKTSP 349
            +C K P    P      T V    ++ +  HP W       WS   TSP
Sbjct: 1002 DCTKPPEPVTPAPPQVTTGVDTGASSTEHMHPDWTTKPSTWWSSTTTSP 1050


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 100 RVDKNKIYLFDCNMWFHIII 159
           R +    +LF C+  FHI+I
Sbjct: 660 RANNPGFWLFHCHFLFHIVI 679


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 353 IHKSLVRRNRWSPVLRRVARPPVSV 427
           + KS   +N+ +P+L + +  PVS+
Sbjct: 137 VEKSSKLKNKSAPILTKTSPTPVSI 161


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 93  QSITYRHHNRVLCKRNGIRGTYGFG 19
           Q + Y +HN      N +   YG+G
Sbjct: 58  QQLQYGYHNHQNYNSNVLSNGYGYG 82


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 93  QSITYRHHNRVLCKRNGIRGTYGFG 19
           Q + Y +HN      N +   YG+G
Sbjct: 58  QQLQYGYHNHQNYNSNVLSNGYGYG 82


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 93  QSITYRHHNRVLCKRNGIRGTYGFG 19
           Q + Y +HN      N +   YG+G
Sbjct: 58  QQLQYGYHNHQNYNSNVLSNGYGYG 82


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 93  QSITYRHHNRVLCKRNGIRGTYGFG 19
           Q + Y +HN      N +   YG+G
Sbjct: 58  QQLQYGYHNHQNYNSNVLSNGYGYG 82


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 247 RWNNSLKHNGSAKD 288
           RW NS++H+ S  D
Sbjct: 183 RWQNSIRHSLSFND 196


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,245
Number of Sequences: 336
Number of extensions: 4289
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23866870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)