Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0014
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   3.4  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    27   4.5  
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl...    26   6.0  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   7.9  

>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 114 IFINSAAQSITYRHHNRVLCKRNGI 40
           I +  A   I Y H+NRV  +RNG+
Sbjct: 378 IVLAGACTPIIYVHYNRVYTRRNGV 402


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 274 RCVSDCCSIERKLRYLVSW*LAAIEGLNIFKM 179
           +C+S+C   ER L Y V W    + G+N  +M
Sbjct: 29  KCISECS--ERGLVYAVRWAAEMLNGMNPIEM 58


>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 262 LKHNGSAKDLASVMENLKKGGLVSRQNQSL 351
           L++N   + +ASV+ NL +G   SRQN S+
Sbjct: 164 LENNAITEIMASVIANLVEGHFGSRQNGSV 193


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 353 IHKSLVRRNRWSPVLRRVARPP 418
           ++ S++ +N+WS V+ R+  PP
Sbjct: 280 VYSSILGKNKWSLVMERLPIPP 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,618,434
Number of Sequences: 5004
Number of extensions: 74665
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)