Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0014
         (860 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5081| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.69 
SB_34920| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_10808| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_13301| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_48834| Best HMM Match : PH (HMM E-Value=3.3e-05)                    30   2.8  
SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_55515| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_54548| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_21846| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_37839| Best HMM Match : HA2 (HMM E-Value=4e-21)                     29   6.4  
SB_20445| Best HMM Match : HNH (HMM E-Value=2.3)                       28   8.5  
SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)                  28   8.5  

>SB_5081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -2

Query: 586 WXFANLCPKFLAAVLLRFFISEIELFVQSDQISSNWLSFPKL--PC 455
           + F+ +  K+L+  + +FF S    F    +ISS+  SFPKL  PC
Sbjct: 135 YSFSRVYNKYLSNRISKFFASSFHTFENHQRISSDRHSFPKLIIPC 180


>SB_34920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -2

Query: 586 WXFANLCPKFLAAVLLRFFISEIELFVQSDQISSNWLSFPKL--PC 455
           + F+ +  K+L+  + +FF S    F    +ISS+  SFPKL  PC
Sbjct: 314 YSFSRVYNKYLSNRISKFFASSFHTFENHRRISSDRHSFPKLIIPC 359


>SB_10808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 580 FANLCPKFLAAVLLRFFISEIELFVQSDQISSNWLSFPKL--PC 455
           F+ +  K+L+  + +FF S    F    +ISS+  SFPKL  PC
Sbjct: 29  FSRVYYKYLSNRISKFFASSFHTFENHRRISSDRHSFPKLIIPC 72


>SB_13301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 580 FANLCPKFLAAVLLRFFISEIELFVQSDQISSNWLSFPKL--PC 455
           F+ +  K+L+  + +FF S    F    +ISS+  SFPKL  PC
Sbjct: 29  FSRVYYKYLSNRISKFFASSFHTFENHRRISSDRHSFPKLIIPC 72


>SB_48834| Best HMM Match : PH (HMM E-Value=3.3e-05)
          Length = 329

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 571 LCPKFLAAVLLRFFISEIELFVQSDQISSNWLSFPKLP 458
           L  + +AA LL+F   +  L + SD I S WL++ K+P
Sbjct: 254 LLTRMIAARLLQFKDVDQSLSLYSDVIGSRWLNWSKVP 291


>SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -2

Query: 559 FLAAVLLRF-FISEIELFVQSDQISSNWL 476
           F+A VL+RF F+S +  ++ ++ ISS WL
Sbjct: 125 FMADVLVRFEFVSRVGRYIANEDISSVWL 153


>SB_55515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 580 FANLCPKFLAAVLLRFFISEIELFVQSDQISSNWLSFPKL 461
           F+ L  K+L+  +L+FF S    F    +ISSN  SF ++
Sbjct: 65  FSRLYYKYLSNRILKFFASSFHTFENLRRISSNRYSFSRV 104


>SB_54548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 580 FANLCPKFLAAVLLRFFISEIELFVQSDQISSNWLSFPKLPCAAVFGKNFAY 425
           F+ +  K+L+  + +FF S    F    +ISS+  SFPKL     F     +
Sbjct: 62  FSRVYYKYLSNRISKFFASSFHTFENHRRISSDRHSFPKLIIPQAFQNKLTF 113


>SB_21846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 580 FANLCPKFLAAVLLRFFISEIELFVQSDQISSNWLSFPKL 461
           F+ L  K+L+  +L+FF S    F    +ISSN  SF ++
Sbjct: 29  FSRLYYKYLSNRILKFFASSFHTFENLRRISSNRYSFSRV 68


>SB_37839| Best HMM Match : HA2 (HMM E-Value=4e-21)
          Length = 422

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -2

Query: 580 FANLCPKFLAAVLLRFFISEIELFVQSDQISSNWLSFPKLPCAAVFGKN 434
           F+ +  K+++  + +FF S    F    +ISS+  SFPKL   +V  +N
Sbjct: 29  FSRVYYKYMSNRISKFFASSFHTFENHRRISSDRHSFPKLIIPSVRFEN 77


>SB_20445| Best HMM Match : HNH (HMM E-Value=2.3)
          Length = 273

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 531 KNLSSTAAKNFGQRLAXSHGKHSRFKMIWANATFQIXRD--LGEISDLGNMSD 683
           KNLSSTA+K   + L   H K  +   +W    + I     L E S L + SD
Sbjct: 95  KNLSSTASKKMEEHLERWHYKDEQIASMWERIDWLIVTTLMLTEASMLTSSSD 147


>SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 510 LFSQIRFHRTGFHFRSCHVLQSLGRTLHTLTGGRATRRS--TGDHLLRR 370
           +F +IR H  GFHF +    ++   T  T +   A  R+  TG  L RR
Sbjct: 759 VFKRIRLHTKGFHFDTTRPHENAETTTITSSTAHAYSRAKWTGPELSRR 807


>SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)
          Length = 1405

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 838 TSNXIXXHFDPNRPTGVSQKSQKM-VFXLIRRLALTGXR 725
           TS+    H+DPNRPT VS  +  + +  ++ RL   G R
Sbjct: 547 TSSRSLAHYDPNRPTIVSSDASNLGIGAVLLRLQDDGTR 585


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,290,557
Number of Sequences: 59808
Number of extensions: 544878
Number of successful extensions: 1522
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)