Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0014
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 359  KSLVRRNRWSPVLRRVARPPVSVCK 433
            KSL RR R S    R   PP+SV +
Sbjct: 1836 KSLPRRGRSSRSSLRTLLPPISVAE 1860


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 359  KSLVRRNRWSPVLRRVARPPVSVCK 433
            KSL RR R S    R   PP+SV +
Sbjct: 1832 KSLPRRGRSSRSSLRTLLPPISVAE 1856


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 244 ARWNNSLKHNGSAKDLASVMENLK 315
           A W N+++HN S       +EN+K
Sbjct: 546 ATWKNAVRHNLSLHKCFMRVENVK 569


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 648 LGEISDLGNMSDMSELQGDGNTGDFSRIPVNANLL 752
           L +I+D+G     S+   DGN GD S    +  +L
Sbjct: 183 LRDINDIGLNRRDSDDGSDGNDGDESSCRADIRIL 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,380
Number of Sequences: 438
Number of extensions: 5819
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)