Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0013
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    29   1.1  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    28   1.4  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   3.3  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    27   3.3  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   4.4  

>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 647 DVLFSKYD*RTANIL-WELLRYLLNNIPLWSKIXTGRIPXPSGI 775
           ++LF   D  TA+++ W  +     N P W    TG+ P   GI
Sbjct: 698 EILFMGPDENTADLVNWATIHAHRRNAPWWKSFFTGKKPTMGGI 741


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +3

Query: 276 MLLVCTLLFTLTHINADSDE---GSISKIGTSVGHTMNIYYCYSCG 404
           +LL C +LF +T  +  S      SI  I T +G   ++YYC++ G
Sbjct: 515 ILLACLILFFMTLFSRSSSTILPPSILLILTFLGIVASLYYCFAHG 560


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 63  WFLKFLKPISIDLYFVLFLFITKLK 137
           W+LK+L P S  + +  FL I+KL+
Sbjct: 337 WWLKYLGPFSYLILYYFFLDISKLQ 361


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +2

Query: 89  KYRFVFRFVSVHYKIENIRPHKNKY-SVVKRNNH 187
           KYRFVF+F S    + ++  +K KY ++++R++H
Sbjct: 769 KYRFVFKF-SPSQPLSSLGKNKEKYDALLERSSH 801


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 204 FTHLSTKFG*KRYQYVKNMFYLNAMLLVCTLLFTLTHINA 323
           F ++S K    + + VKN+  L   LL+C + F    I A
Sbjct: 830 FANISLKVSDHKVELVKNLSLLELALLICAVRFEARDIPA 869


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,635,791
Number of Sequences: 5004
Number of extensions: 80781
Number of successful extensions: 201
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)