Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0013
(847 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g47300.1 68416.m05141 selenoprotein-related contains weak sim... 63 3e-10
At5g58640.1 68418.m07348 selenoprotein-related contains weak sim... 59 3e-09
At5g23575.1 68418.m02766 transmembrane protein, putative similar... 29 3.9
At2g48050.1 68415.m06014 expressed protein ; expression supporte... 29 3.9
At3g60020.1 68416.m06702 E3 ubiquitin ligase SCF complex subunit... 29 5.1
At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein con... 28 6.8
At1g06100.1 68414.m00639 fatty acid desaturase family protein si... 28 6.8
At2g32540.1 68415.m03975 cellulose synthase family protein simil... 28 9.0
>At3g47300.1 68416.m05141 selenoprotein-related contains weak
similarity to selenoprotein W (Swiss-Prot:P49904)
[Rattus norvegicus]
Length = 209
Score = 62.9 bits (146), Expect = 3e-10
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Frame = +3
Query: 354 GTSVGHTMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANYDPPGFNMYLHELLVLGK 533
G G+T+ I +C SC YK +++ +P + V+ ANY P L +++ + +
Sbjct: 52 GVGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQ 111
Query: 534 MLVIMCILSGVNIFAWLNKPQ-PAWWSWCLENKLYACMMMFFLANMIEGQLISSGSF 701
+ VI I+ G IF + Q PAW+ N+ + + L N ++ L SSG+F
Sbjct: 112 VGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAF 168
>At5g58640.1 68418.m07348 selenoprotein-related contains weak
similarity to Selenoprotein W (Swiss-Prot:P49904)
[Rattus norvegicus]
Length = 228
Score = 59.3 bits (137), Expect = 3e-09
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Frame = +3
Query: 366 GHTMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANYDPPGFNMYLHELLVLGKMLVI 545
G+T+ I +C SC YK +++ +P + VI ANY PP L +++ + +M VI
Sbjct: 73 GNTVEINFCVSCSYKGTAVTMKKMLETAFPGLDVILANYPPPAPKRLLAKVVPVVQMGVI 132
Query: 546 MCILSGVNIFAWLN-KPQPAWWSWCLENKLYACMMMFFLANMIEGQLISSGSF 701
I++G I + PAW+ N+ + + + N ++ L SSG+F
Sbjct: 133 GMIVAGDRILPMIGITNPPAWFHSLRANRFGSMASTWLIGNFLQSYLQSSGAF 185
>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
cleft lip and palate transmembrane protein 1 [Homo
sapiens] GI:4039014; contains Pfam profile PF05602:
Cleft lip and palate transmembrane protein 1 (CLPTM1)
Length = 593
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/38 (28%), Positives = 25/38 (65%)
Frame = +3
Query: 540 VIMCILSGVNIFAWLNKPQPAWWSWCLENKLYACMMMF 653
V++ ++ G++I++ + +W+SW L + L +C+ MF
Sbjct: 452 VLLLLVIGLSIYSLAYERHKSWYSWIL-SSLTSCVYMF 488
>At2g48050.1 68415.m06014 expressed protein ; expression supported
by MPSS
Length = 1500
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 444 QKYPEISV-IGANYDPPGFNMYLHELLVLGKMLVIMCILSGVNIFAWLNK 590
QKY E+S +G PGF + E + GK+LV+ N+F WL +
Sbjct: 246 QKYAELSFYLGLRVYEPGF--WGIESGLRGKVLVVAACTLQYNVFRWLER 293
>At3g60020.1 68416.m06702 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At5), putative E3 ubiquitin ligase; similar
to Skp1 GI:4959710 from [Medicago sativa]
Length = 153
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 9 LIIKKC--HLKNKIKEALKQWFLKFLKPISIDLYF 107
++I C H+K+K +E LK+W F+K I + F
Sbjct: 53 IVIDYCEKHVKSKEEEDLKEWDADFMKTIETTILF 87
>At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein
contains Pfam profile PF05602: Cleft lip and palate
transmembrane protein 1 (CLPTM1)
Length = 590
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +3
Query: 540 VIMCILSGVNIFAWLNKPQPAWWSWCLENKLYACMMMF 653
V++ ++ G +I++ + +W+SW L + L +C+ MF
Sbjct: 450 VLLLLVVGFSIYSLAYERHKSWYSWIL-SSLTSCVYMF 486
>At1g06100.1 68414.m00639 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 299
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 12 IIKKCHLKNKIKEALKQWFLKFLK 83
I +KC +N + + +QWF +FLK
Sbjct: 148 IREKCGRRNNVMDLKQQWFYRFLK 171
>At2g32540.1 68415.m03975 cellulose synthase family protein similar
to cellulose synthase catalytic subunit from Arabidopsis
thaliana [gi:5230423], cellulose synthase-5 from Zea
mays [gi:9622882]
Length = 755
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 446 LLYNSCIVFKYLFVATRITVIDIHCMPDTCTNFTNAAF 333
LL+NS + K +++ IT++ IHC+ T F N F
Sbjct: 558 LLHNSALFPKGVYLGIIITLVGIHCL-YTLWEFMNLGF 594
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,322,910
Number of Sequences: 28952
Number of extensions: 392165
Number of successful extensions: 937
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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