Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0012
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    29   0.66 
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   3.5  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    27   3.5  

>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 20/87 (22%), Positives = 42/87 (48%)
 Frame = -3

Query: 289 VLREQRNRQAVVIIAKVXXXRSWIRYRLFMVAVIPFYFPSSRPLSVMKLTFEQRFKS*VI 110
           VL ++ + QA + ++++     +  +  F   +I +    SR   ++   F +  KS +I
Sbjct: 243 VLGDKSHHQASIHLSQINYFLWFFFFFSFPSYIIKYLMSHSRRSKLLSAVFSK--KSFLI 300

Query: 109 L*NTTLVSCFNNITHP*IFLSFTNYMY 29
           +    L++ FN I HP I     +Y++
Sbjct: 301 VSVLLLIAHFNTIFHPFILADNRHYLF 327


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 326 GAWGDVITVVRGGASGATKPAGGGDYCQST 237
           G +G   T   GG + AT P+GGG +  +T
Sbjct: 89  GMFGQSNTPAFGGTNNATNPSGGGLFGSNT 118


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 560 HPILDFIWAXNIPRSXISVT 619
           HPILDF WA + P     +T
Sbjct: 234 HPILDFTWARSDPSPHFRIT 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,587
Number of Sequences: 5004
Number of extensions: 60804
Number of successful extensions: 161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)