Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0012
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 32 0.52
06_03_1191 + 28286685-28287008,28287149-28287211,28287377-282874... 31 1.6
09_02_0401 - 8575886-8575935,8576518-8576617,8576798-8576959,857... 30 2.8
03_05_0151 - 21284751-21284800,21285422-21285521,21285702-212858... 30 2.8
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880... 29 3.7
06_03_0743 + 24069752-24070483,24071890-24072345 26 5.8
10_08_0062 + 14586613-14586966 29 6.5
01_07_0245 - 42248013-42248104,42248274-42248529,42248851-422490... 29 6.5
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 28 8.5
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 28 8.5
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41... 28 8.5
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 28 8.5
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 32.3 bits (70), Expect = 0.52
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 221 PAPPPSYFGNNHHRLPVSLLP 283
PAPP Y GNN+H+ P++ +P
Sbjct: 1230 PAPPAPYHGNNYHQPPMASVP 1250
>06_03_1191 +
28286685-28287008,28287149-28287211,28287377-28287461,
28287561-28287623,28287954-28288029,28288190-28288223,
28289553-28289659,28289738-28289807,28289852-28289950
Length = 306
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 191 YRHHEQSVPNPAPPPSYFGNNHHRLPVSLLPK-HLRVL 301
YRHH P+P PPP+Y G + L P+ LR L
Sbjct: 35 YRHHAYP-PHPPPPPAYVGAYYDHAAEPLPPRDELRTL 71
>09_02_0401 -
8575886-8575935,8576518-8576617,8576798-8576959,
8577106-8577253,8577436-8577458,8577615-8577685,
8577792-8577878,8578039-8578470,8578574-8579009
Length = 502
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 161 WTRRWKIKWDYRHHEQSVPNPAPPPSYFGNN 253
W RRW+ + R +Q+ P P PPP + N
Sbjct: 114 WIRRWRRR---RRRQQAQPLPLPPPMLYNPN 141
>03_05_0151 -
21284751-21284800,21285422-21285521,21285702-21285863,
21286010-21286157,21286286-21286362,21286519-21286589,
21286696-21286782,21286943-21287374,21287478-21287913
Length = 520
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 161 WTRRWKIKWDYRHHEQSVPNPAPPPSYFGNN 253
W RRW+ + R +Q+ P P PPP + N
Sbjct: 114 WIRRWRRR---RRRQQAQPLPLPPPMLYNPN 141
>02_05_0096 +
25785995-25786311,25786716-25786776,25787825-25788059,
25788292-25788530,25789700-25789951,25790043-25790223,
25790864-25790952,25791269-25791342,25791481-25791584,
25791919-25791957,25792324-25792436
Length = 567
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +2
Query: 230 PPSYFGNNHHRLPVSLLPKHLRVL----Q**HHPKHRQDHQES*AQGQRALRVKR 382
PP +NHH+ + P H + + Q HH H Q HQ+ Q R ++ R
Sbjct: 26 PPLQQQHNHHQQQQTSAPHHQQYVQRQPQQHHHHNHHQQHQQQQQQWLRRNQIAR 80
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 25.8 bits (54), Expect(2) = 5.8
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +2
Query: 218 NPAPPPSYFGNNHHRLPVSLLPKHLRVLQ**HHPKHRQDHQES*AQGQ 361
+P PPPS LP+ L HH +H QDH QGQ
Sbjct: 48 HPPPPPSS-PPIREALPLLSLTPSTTHDDDHHHRRHDQDHHHHHKQGQ 94
Score = 21.4 bits (43), Expect(2) = 5.8
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +2
Query: 197 HHEQSVPNPAPPP 235
HH P P PPP
Sbjct: 19 HHPLHFPPPPPPP 31
>10_08_0062 + 14586613-14586966
Length = 117
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 296 RGGASGATKPAGGGDYCQSTKEAELDSVPIVHGGG 192
R GA GA GGGD ++ EA+ GGG
Sbjct: 23 RRGAGGAGAGCGGGDGAEAEAEADAGGGGAAEGGG 57
>01_07_0245 -
42248013-42248104,42248274-42248529,42248851-42249038,
42249458-42249548
Length = 208
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Frame = +2
Query: 161 WTR---RWKIKWDYRHHEQSVPN 220
WTR RWK+ W R H+Q P+
Sbjct: 43 WTRSGHRWKVAWKQRLHQQQPPH 65
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 28.3 bits (60), Expect = 8.5
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 176 KIKWDYRHHEQSVPNPAPPP 235
+++ + HH Q +P P PPP
Sbjct: 74 RVQHHHHHHHQQLPAPTPPP 93
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 429 NTHYIGSSLYFSWMLLRVF-RSVLHEI-VKTANHY 527
+T I SL +W LLR+F R +LH I KT + Y
Sbjct: 486 DTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQY 520
>02_01_0055 +
410661-411380,411481-413733,414486-414875,414983-418153
Length = 2177
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 275 TKPAGGGDYCQSTKEAELDSVPIVHGGGNPILFSIVASIV 156
T+ +G Y Q K +D + ++H P+L SIV+ V
Sbjct: 633 TRKSGDRTYTQMVKLLIIDEIHLLHDNRGPVLESIVSRTV 672
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 429 NTHYIGSSLYFSWMLLRVF-RSVLHEI-VKTANHY 527
+T I SL +W LLR+F R +LH I KT + Y
Sbjct: 456 DTRNIFQSLDLAWSLLRIFPRELLHRIPAKTLDQY 490
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,180,474
Number of Sequences: 37544
Number of extensions: 459128
Number of successful extensions: 1725
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1710
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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