Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0012
         (876 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_41816| Best HMM Match : Peptidase_M10 (HMM E-Value=0)               28   8.6  

>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 221 PAPPPSYFGNNHHRLPVSLLPKHLRVLQ**HH 316
           P+PP +Y+ ++H  + + LLP         HH
Sbjct: 373 PSPPSTYYHHHHQHITIKLLPSSPSTYHHYHH 404


>SB_41816| Best HMM Match : Peptidase_M10 (HMM E-Value=0)
          Length = 556

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -2

Query: 305 TVVRGGASGATKPAGGGDYCQSTKEAELDSVPIVHGGGNPILF 177
           T+    + G  KPAGGG     T   +LD+V +V G GN   F
Sbjct: 275 TIPTSSSGGPDKPAGGG---PDTCTTDLDTV-VVAGDGNTYAF 313


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,216,838
Number of Sequences: 59808
Number of extensions: 495567
Number of successful extensions: 1037
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)