Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0012
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-20|CAI79282.1|  110|Caenorhabditis elegans Hypothetical...    32   0.47 
U67956-1|AAB07690.2|  157|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>AL110500-20|CAI79282.1|  110|Caenorhabditis elegans Hypothetical
           protein Y87G2A.19 protein.
          Length = 110

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 501 EIVKTANHYCPQCKAFVGAF 560
           E  K A HYCP C+A++G +
Sbjct: 84  ETFKDAEHYCPSCRAWIGTY 103


>U67956-1|AAB07690.2|  157|Caenorhabditis elegans Hypothetical
           protein F16F9.1 protein.
          Length = 157

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 510 KTANHYCPQCKAFVG 554
           K A+HYCP+C A +G
Sbjct: 137 KDAHHYCPRCNALLG 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,924,298
Number of Sequences: 27780
Number of extensions: 370758
Number of successful extensions: 1105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)