Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0011
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    31   0.27 
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    29   0.63 
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    28   1.5  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    27   3.4  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    27   4.5  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   4.5  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   5.9  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    26   7.8  

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = +1

Query: 358 RWLHEAYGLGRFGYAQP-----ERFHYSISGRQER 447
           R++HEA+G+  FG + P     E+FH++ SG  +R
Sbjct: 629 RYVHEAFGMHTFGDSGPAPKLYEKFHFTTSGVAQR 663


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
 Frame = +2

Query: 203 QVRSDRSHHC-------RHYCFHCPFFG-CCGAVKENHCMIITFSVFLLI 328
           QV+  RS+HC         Y  HCP+ G C GA      ++  F++  LI
Sbjct: 407 QVKPPRSYHCGACKRCINRYDHHCPWTGNCVGARNHRTFLLFVFTLSTLI 456


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 568 DGVVAACTENSTNFHSKGC-LTKLVVHMKDIGMVLAGVGVGYR 693
           DGVV A  +  T+  + G  L K+     DIGMV +G+G  +R
Sbjct: 41  DGVVLATEKKPTSELAIGASLEKVCAITPDIGMVYSGMGPDFR 83


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 368 MKHTDLEDSVMRNLNASITQYPVDKN 445
           +K   +EDS + N+ AS+  + VDKN
Sbjct: 416 VKVETVEDSFLSNIGASLLSFTVDKN 441


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -2

Query: 517 RPSGRTVYTAAL*V-CLYDINGLLDVLVYRILSNGS 413
           R +G+ ++ +A+ +  L+D+ GL++ L+Y+    GS
Sbjct: 463 RATGKNIHESAIALFSLHDVPGLMEELIYKSRGRGS 498


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 380 DLEDSVMRNLNASITQYPVDKNVQK-TIDIIQTDLQCCGINSPATGPIT 523
           D+E++V+       T  P+  N Q+ T D+ ++D   CG+ +  + P+T
Sbjct: 250 DVENAVVGTSPLEYTSKPLAANRQRSTADLTESD-NICGLTAGKSDPVT 297


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 421  NGSVQVAHNRIFQVRMLHVTSDAHSQFSHEYDQEE 317
            +GS+ + H++ FQ    H T  +  +   EY   E
Sbjct: 1111 SGSISLKHSKSFQSASTHSTKSSSVEIVREYSSRE 1145


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 658 GMVLAGVGVGYRFWFSSSVWIFACCLRFVSIPQP 759
           G + A V V   FWF S   I   C     IP P
Sbjct: 270 GFLGAPVAVATTFWFQSICLILYICFSSTPIPWP 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,344,556
Number of Sequences: 5004
Number of extensions: 68940
Number of successful extensions: 207
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)