Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0011
(851 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 67 2e-11
Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical pr... 58 8e-09
Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical pr... 50 2e-06
AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin f... 50 2e-06
AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin f... 50 2e-06
AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical ... 46 3e-05
U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin fam... 46 5e-05
U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin fam... 44 1e-04
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 42 7e-04
Z73971-4|CAA98254.1| 205|Caenorhabditis elegans Hypothetical pr... 38 0.012
AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical ... 37 0.021
L14745-7|AAK71354.1| 234|Caenorhabditis elegans Tetraspanin fam... 34 0.11
Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical pr... 34 0.15
L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin fam... 34 0.15
AL021487-1|CAA16352.4| 241|Caenorhabditis elegans Hypothetical ... 32 0.45
Z79754-15|CAC42292.1| 173|Caenorhabditis elegans Hypothetical p... 30 1.8
Z79600-11|CAC42309.1| 173|Caenorhabditis elegans Hypothetical p... 30 1.8
Z73908-1|CAA98130.2| 230|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z92824-4|CAB07307.2| 395|Caenorhabditis elegans B0413.2 protein. 29 3.2
Z81086-1|CAB03120.2| 258|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z46787-6|CAA86744.1| 392|Caenorhabditis elegans Hypothetical pr... 29 5.5
X98132-1|CAA66831.1| 387|Caenorhabditis elegans N-acetyllactosa... 29 5.5
Z68319-5|CAA92703.1| 261|Caenorhabditis elegans Hypothetical pr... 28 7.3
U80840-9|AAB37924.1| 289|Caenorhabditis elegans Hypothetical pr... 28 7.3
U80840-7|AAB37928.2| 300|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z92829-4|CAD54131.1| 569|Caenorhabditis elegans Hypothetical pr... 28 9.7
Z66519-7|CAA91378.2| 338|Caenorhabditis elegans Hypothetical pr... 28 9.7
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (... 28 9.7
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (... 28 9.7
AF125971-5|AAD14765.1| 484|Caenorhabditis elegans Hypothetical ... 28 9.7
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 66.9 bits (156), Expect = 2e-11
Identities = 26/87 (29%), Positives = 44/87 (50%)
Frame = +2
Query: 242 CFHCPFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI 421
C F GCCGA++EN+C+ ++F+V L ++ E+A I GY H + L +
Sbjct: 63 CTLLGFLGCCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQTGM 122
Query: 422 TQYPVDKNVQKTIDIIQTDLQCCGINS 502
+Y + V+ D +CCG+ +
Sbjct: 123 VRYHESRGVESAWDKTHQLFECCGVTN 149
Score = 35.9 bits (79), Expect = 0.037
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +3
Query: 57 LEGGMSCVKYLMFCFNLLFAITGLIILIVG 146
+EGG++ VKYL+F NL+ + GL ++IVG
Sbjct: 2 VEGGVTIVKYLLFLANLVLWVGGLSLIIVG 31
>Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical
protein T14G10.6 protein.
Length = 308
Score = 58.0 bits (134), Expect = 8e-09
Identities = 26/81 (32%), Positives = 43/81 (53%)
Frame = +2
Query: 257 FFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPV 436
F GC G+++EN + +S L ++ +AE + G+ Y L++ + LN + Y
Sbjct: 100 FSGCVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRDQLDNYIRNLLNDVVVGYRD 159
Query: 437 DKNVQKTIDIIQTDLQCCGIN 499
D ++Q ID +Q CCGIN
Sbjct: 160 DPDLQLLIDSMQETWMCCGIN 180
Score = 36.7 bits (81), Expect = 0.021
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +3
Query: 75 CVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 182
CVKY +F FN++F + G +L+ G+ A+I ++N
Sbjct: 37 CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVN 72
>Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical
protein F33C8.3 protein.
Length = 282
Score = 50.4 bits (115), Expect = 2e-06
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +2
Query: 257 FFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI-TQYP 433
+FGC GA K N C + F L++ F ELA + + K ++ V ++ +I +Y
Sbjct: 72 YFGCIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIKHYVESSMYDTIRNRYS 131
Query: 434 VDKNVQKTIDIIQTDLQCCGINS 502
+ + D +Q +CCG+ +
Sbjct: 132 SETAFKDAFDTVQEKFECCGVKT 154
>AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin
family protein 14,isoform a protein.
Length = 427
Score = 50.4 bits (115), Expect = 2e-06
Identities = 24/89 (26%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Frame = +2
Query: 257 FFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY-MKHTDLEDSVMRN--LNASITQ 427
FFG GA+++N ++ F+ + + ++ +AV + + + +TD + + N L ++
Sbjct: 88 FFGFMGALRDNIFLLKCFAACVFLSYILVVAVTLVFFTLFYTDTTEGLSANWLLLYAVKN 147
Query: 428 YPVDKNVQKTIDIIQTDLQCCGINSPATG 514
Y ++N+ + +D +Q +L+CCG++S A G
Sbjct: 148 YHTNRNLAEIMDALQENLECCGVSSIAQG 176
>AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin
family protein 14,isoform b protein.
Length = 451
Score = 50.4 bits (115), Expect = 2e-06
Identities = 24/89 (26%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Frame = +2
Query: 257 FFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY-MKHTDLEDSVMRN--LNASITQ 427
FFG GA+++N ++ F+ + + ++ +AV + + + +TD + + N L ++
Sbjct: 112 FFGFMGALRDNIFLLKCFAACVFLSYILVVAVTLVFFTLFYTDTTEGLSANWLLLYAVKN 171
Query: 428 YPVDKNVQKTIDIIQTDLQCCGINSPATG 514
Y ++N+ + +D +Q +L+CCG++S A G
Sbjct: 172 YHTNRNLAEIMDALQENLECCGVSSIAQG 200
>AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical
protein Y39B6A.6 protein.
Length = 321
Score = 46.4 bits (105), Expect = 3e-05
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +2
Query: 263 GCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDK 442
GCCG + +I +S+ + ++ VA L+ GI K L+ + LN + Y
Sbjct: 131 GCCGITGRSRPFLIIYSMVVFLLLVATLSCGIYLLYKKDGLDVELSDALNYMVQHYYQGP 190
Query: 443 N-VQKTIDIIQTDLQCCG 493
VQ+++D +QT +CCG
Sbjct: 191 GVVQESLDHLQTAFRCCG 208
>U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin family
protein 9 protein.
Length = 233
Score = 45.6 bits (103), Expect = 5e-05
Identities = 24/79 (30%), Positives = 37/79 (46%)
Frame = +2
Query: 257 FFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPV 436
FFGCCGA E+ ++ F ++I+ EL + + S+ + L S Y +
Sbjct: 83 FFGCCGAGCESPVLLGLFIFIIVILTAVELGATVFAMTNREEFVSSIQQVLKKSSATYEL 142
Query: 437 DKNVQKTIDIIQTDLQCCG 493
KN++ IQ QCCG
Sbjct: 143 RKNIKP----IQNVFQCCG 157
>U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin family
protein 17 protein.
Length = 243
Score = 44.4 bits (100), Expect = 1e-04
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Frame = +2
Query: 257 FFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI----- 421
F G CGAV + +++ F +FL+ F+A++A+G + + D SV N+ +
Sbjct: 42 FLGLCGAVNRSRFLLLAFVMFLIGTFLADVAMGTLS-LFYKDKVYSVKENVREIVKSKYG 100
Query: 422 --TQYPVDKNVQKTIDIIQTDLQCCGINSP 505
T P +K V + ID +Q +CCG P
Sbjct: 101 VMTSEPENKMVTEFIDKLQFYEKCCGSLGP 130
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 41.5 bits (93), Expect = 7e-04
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Frame = +2
Query: 257 FFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY----MKHTDLEDSVMRNL----- 409
F GCCGA KE ++ +S L++I ++A I + M D D + +L
Sbjct: 98 FLGCCGAAKEWRPLLCCYSSCLMLILAIQIAATIYAFLHSHMFENDFRDILHSSLKMYNG 157
Query: 410 --NASITQYPVDKNVQKTI-DIIQTDLQCCGINS 502
N ++ P D + KT D I + CCG++S
Sbjct: 158 TDNMKVSNNPQDGLLVKTAWDKIMIEKSCCGVDS 191
Score = 33.1 bits (72), Expect = 0.26
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 48 TMALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 182
TM L +K+ +F FNL+F + GLI L +G+ ++ Y N
Sbjct: 8 TMPLSCTARALKFSLFIFNLVFLLCGLICLGIGLWLVLDKYAIDN 52
>Z73971-4|CAA98254.1| 205|Caenorhabditis elegans Hypothetical
protein C50H2.6 protein.
Length = 205
Score = 37.5 bits (83), Expect = 0.012
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 529 PIPSTCCSAQEINDGVVAACTENSTNFHSKGCLTKLV 639
P+P+T CSA I++ V +C ST H+K L+K V
Sbjct: 96 PLPATFCSAASIDNNAVKSCKNKSTTLHAKILLSKEV 132
>AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical
protein Y39E4B.4 protein.
Length = 223
Score = 36.7 bits (81), Expect = 0.021
Identities = 21/79 (26%), Positives = 37/79 (46%)
Frame = +2
Query: 257 FFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPV 436
F G GAV + ++ + +F++I+F+ E+A+GI +K + +V + S
Sbjct: 86 FVGVIGAVIRSKYLLAPYFLFMVILFLLEIAIGITVLVKRRSVRRTVKEYVFDSF----- 140
Query: 437 DKNVQKTIDIIQTDLQCCG 493
+ N Q I CCG
Sbjct: 141 NMNAQADISAFNFRYNCCG 159
>L14745-7|AAK71354.1| 234|Caenorhabditis elegans Tetraspanin family
protein 2 protein.
Length = 234
Score = 34.3 bits (75), Expect = 0.11
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +2
Query: 263 GCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLN-ASITQYPVD 439
G GA+ + ++ T V ++I F+ EL IA + K L + R N +T D
Sbjct: 88 GLIGAISQKKPVLATCLVLIVIFFIMELGGSIALWSKRGSLRSLLYRFANDIYLTNSVFD 147
Query: 440 KNVQKTIDIIQTDLQCCGI 496
I IIQ CCG+
Sbjct: 148 ------ISIIQNTYNCCGV 160
>Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical
protein C17G1.8 protein.
Length = 291
Score = 33.9 bits (74), Expect = 0.15
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Frame = +2
Query: 263 GCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTD----LEDSVMRNLN--ASIT 424
G G N ++ ++ F++++ + I G + + L S++ N+N A +T
Sbjct: 66 GYLGVSWSNKSLLYSYIGFVILLILVHGIARITGSLHKEEAKENLRKSMLHNINTTAVVT 125
Query: 425 QYPVDKNVQKTIDIIQTDLQCCGINS 502
+ + + T D +Q +LQCCG+++
Sbjct: 126 KIGREIKLSLTWDHLQRELQCCGVDN 151
>L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin family
protein 1 protein.
Length = 244
Score = 33.9 bits (74), Expect = 0.15
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +2
Query: 299 IITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKNVQKTIDIIQTD 478
+IT+ V ++++ E+ G+A ++ L D+ ++A T N + IIQ
Sbjct: 101 MITYLVLIIVLVSLEIGCGVAVLVRRNSLHDNTNSLIDAMYT-----TNSVNDLKIIQDK 155
Query: 479 LQCCGINS 502
CCGI +
Sbjct: 156 YNCCGIEN 163
>AL021487-1|CAA16352.4| 241|Caenorhabditis elegans Hypothetical
protein Y45F10B.1 protein.
Length = 241
Score = 32.3 bits (70), Expect = 0.45
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 257 FFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTD--LEDSVMRNLNASITQY 430
F GC + + V + I+FV ++ V I ++ + D + V + + Y
Sbjct: 80 FCGCFAVGFGSKTALSVHLVLVFIVFVVKI-VAIVMFLANNDHLRREFVGVYRDELVANY 138
Query: 431 PVDKNVQKTIDIIQTDLQCCGIN 499
+ + T+D + T L+CCG N
Sbjct: 139 HNNSRTKNTLDWVHTSLKCCGAN 161
>Z79754-15|CAC42292.1| 173|Caenorhabditis elegans Hypothetical
protein F59C6.11 protein.
Length = 173
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 667 LAGVGVGYRFWFSSSVWIFACCLRFVS 747
L GVG GY FW + + IF+C + +S
Sbjct: 139 LVGVGFGYCFWMAVASSIFSCSVVIIS 165
>Z79600-11|CAC42309.1| 173|Caenorhabditis elegans Hypothetical
protein F59C6.11 protein.
Length = 173
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 667 LAGVGVGYRFWFSSSVWIFACCLRFVS 747
L GVG GY FW + + IF+C + +S
Sbjct: 139 LVGVGFGYCFWMAVASSIFSCSVVIIS 165
>Z73908-1|CAA98130.2| 230|Caenorhabditis elegans Hypothetical
protein F53B2.2 protein.
Length = 230
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +2
Query: 263 GCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTD--LEDSVMRNLNASITQYPV 436
GC + + V + ++FV ++ V I ++ + D + V + + Y
Sbjct: 71 GCFAVCFGSKTALSVHLVLVFLVFVVKI-VAIVMFLANKDHLRREFVGVYRDELVANYHN 129
Query: 437 DKNVQKTIDIIQTDLQCCGIN 499
+ + T+D + T L+CCG N
Sbjct: 130 NSRTKNTLDWVHTSLKCCGAN 150
>Z92824-4|CAB07307.2| 395|Caenorhabditis elegans B0413.2 protein.
Length = 395
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 263 GCCGAVKENHCMIITFSVFLLIIFVAELAVGI 358
GCCG + +I +S+ + ++ VA L+ GI
Sbjct: 242 GCCGITGRSRPFLIIYSMVVFLLLVATLSCGI 273
>Z81086-1|CAB03120.2| 258|Caenorhabditis elegans Hypothetical
protein F53B6.1 protein.
Length = 258
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +2
Query: 281 KENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLN--ASITQ-YPVD--KN 445
KE C + + +V ++I V + G G L NL S+ + Y K
Sbjct: 84 KEMRCFVTSCAVASIVIAVMLIIGGCIGLNFRDQLTHYTPLNLKMLTSLRELYGTHDMKG 143
Query: 446 VQKTIDIIQTDLQCCGIN 499
+ ++ D +Q++ +CCG+N
Sbjct: 144 ITESWDALQSNFKCCGVN 161
>Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical
protein F30A10.5 protein.
Length = 327
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -2
Query: 166 EFISALMPTIRMINPVMANRRLKQNMRYFTQDIPPSRAIVI---QLNITAKLYSR 11
+F L P + + P++ + QN+R +IP AI I QL + LY R
Sbjct: 54 KFYKILEPGLNFLLPIIDKIKFVQNLREIAIEIPEQGAITIDNVQLRLDGVLYLR 108
>Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical
protein W02B12.11 protein.
Length = 387
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +2
Query: 278 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 454
++ +HC+I +FS LIIFVA + ++++ L D R + A+ Q V+ NVQ+
Sbjct: 1 MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58
Query: 455 T 457
+
Sbjct: 59 S 59
>Z46787-6|CAA86744.1| 392|Caenorhabditis elegans Hypothetical
protein C16C10.6 protein.
Length = 392
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 752 GMETKRRQHANIHTEELNQKRYPTPTPAST 663
G+ T ++ A H E + Q+ Y TPTP S+
Sbjct: 262 GLNTVSKKKATTHAERIRQRNY-TPTPPSS 290
>X98132-1|CAA66831.1| 387|Caenorhabditis elegans
N-acetyllactosamine synthase protein.
Length = 387
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +2
Query: 278 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 454
++ +HC+I +FS LIIFVA + ++++ L D R + A+ Q V+ NVQ+
Sbjct: 1 MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58
Query: 455 T 457
+
Sbjct: 59 S 59
>Z68319-5|CAA92703.1| 261|Caenorhabditis elegans Hypothetical
protein T23G7.5a protein.
Length = 261
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 490 RYKQSGHWADHGLPIPSTCCSAQEIND 570
RY + WADHG+ C E+N+
Sbjct: 122 RYYKKTEWADHGVKYLKLNCPGHEVNE 148
>U80840-9|AAB37924.1| 289|Caenorhabditis elegans Hypothetical
protein F08D12.3a protein.
Length = 289
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 505 GHWADHGLPIPSTCCSAQEINDGVVAACTENST 603
G+ +D + + CC AQ++ D A C E +
Sbjct: 72 GYCSDGQVVVGDICCEAQDVYDSSTATCQEGKS 104
>U80840-7|AAB37928.2| 300|Caenorhabditis elegans Hypothetical
protein F08D12.3b protein.
Length = 300
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 505 GHWADHGLPIPSTCCSAQEINDGVVAACTENST 603
G+ +D + + CC AQ++ D A C E +
Sbjct: 94 GYCSDGQVVVGDICCEAQDVYDSSTATCQEGKS 126
>Z92829-4|CAD54131.1| 569|Caenorhabditis elegans Hypothetical
protein F10A3.4 protein.
Length = 569
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 398 MRNLNASIT-QYPVDKNVQKTIDIIQTDLQCCGINSPATGPI 520
+++ NA+ + QYP D+N+ T+ + T LQ +NS AT +
Sbjct: 416 VQDQNATYSYQYPRDQNINTTVSVNGTYLQ-VALNSSATSDV 456
>Z66519-7|CAA91378.2| 338|Caenorhabditis elegans Hypothetical
protein B0334.7 protein.
Length = 338
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 664 VLAGVGVGYRFWFSSSVWIFACC 732
VL G+ G WFS VWI C
Sbjct: 81 VLVGISAGVLSWFSVPVWIQVFC 103
>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform b protein.
Length = 1069
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 561 LLGGAARARYGQTVIGPVAGLFIPQ 487
+LGG +A Y TV GP A L P+
Sbjct: 795 MLGGRVQAGYNMTVTGPEANLIQPR 819
>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform a protein.
Length = 1065
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 561 LLGGAARARYGQTVIGPVAGLFIPQ 487
+LGG +A Y TV GP A L P+
Sbjct: 791 MLGGRVQAGYNMTVTGPEANLIQPR 815
>AF125971-5|AAD14765.1| 484|Caenorhabditis elegans Hypothetical
protein Y4C6B.2a protein.
Length = 484
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 239 YCFHCPFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKH-TDLEDSVMRNL 409
Y HC F +K+ H + + +IIF+ L V ++GY + + L DS++ ++
Sbjct: 214 YGGHCAFPTIQHDMKKPHHFSRSIIIAFIIIFIFYLPVSMSGYFVYGSSLTDSIIPSI 271
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,734,406
Number of Sequences: 27780
Number of extensions: 397621
Number of successful extensions: 1346
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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