Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0010
         (758 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   4.6  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   6.1  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   8.1  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   8.1  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 294 SAHSRSRFRVLLILYSDASFYC 229
           S HS   F+ L +L + A F C
Sbjct: 13  STHSMKNFKYLKVLVTFAHFIC 34


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 317 RSGSFSGRMVACRRNSFRS 373
           R+G+FS    +CR ++FR+
Sbjct: 378 RNGTFSTTANSCRSSTFRN 396


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 14/47 (29%), Positives = 18/47 (38%)
 Frame = +3

Query: 114 TLY*RRRLSDHTRRLHTPXRQCRLNGCHRA*RLHRYGRYNKSWRQNK 254
           T Y   +L +  R  H     CR      A  L+   R  K W QN+
Sbjct: 90  TAYTSSQLVELEREFHRSKYLCRPRRIQMAQNLNLTERQIKIWFQNR 136


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 14/47 (29%), Positives = 18/47 (38%)
 Frame = +3

Query: 114 TLY*RRRLSDHTRRLHTPXRQCRLNGCHRA*RLHRYGRYNKSWRQNK 254
           T Y   +L +  R  H     CR      A  L+   R  K W QN+
Sbjct: 110 TAYTSSQLVELEREFHRSKYLCRPRRIQMAQNLNLTERQIKIWFQNR 156


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,651
Number of Sequences: 336
Number of extensions: 3431
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)