Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0010
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc... 60 3e-10
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc... 38 0.001
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 30 0.31
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 29 0.54
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 28 1.7
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch... 26 6.7
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 25 8.9
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 25 8.9
>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 414
Score = 60.1 bits (139), Expect = 3e-10
Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Frame = +1
Query: 28 LYSMQVSSWWSQVKXAGSAIYANR-------HCLTLHCTRDDVCQIIPDVYIHPXASVDS 186
+Y+ +W Q+K AGSA+ AN H TL D +II V+IHP A V
Sbjct: 240 IYAYNTPEFWRQIKTAGSAVPANSLYLQKAYHDGTLP-KPDTEAEIIQPVFIHPNAIVSK 298
Query: 187 TAVIGPNVSIGTGVTIKAGVRIKN 258
A IGPNVSIG V I+ G RI+N
Sbjct: 299 GAKIGPNVSIGARVRIEDGARIRN 322
Score = 46.8 bits (106), Expect = 3e-06
Identities = 23/86 (26%), Positives = 49/86 (56%)
Frame = +3
Query: 252 KESIILENATVNEHSLIMYSVVGREASVGEWSRVEGTPSDPDPNKPFAKMDNRPLFNTDG 431
+ SII E+ ++ ++++++S++ R +G+WSRVEG+P+ P + ++ +
Sbjct: 321 RNSIIQEDCEISANAVVLHSILSRHCKIGKWSRVEGSPTLPSQHSTTIMRNSVKV----- 375
Query: 432 RLNPSITILGAGVVVXAETILLNSIV 509
+IT++GA +V E + N +V
Sbjct: 376 ---QAITVMGADCIVHDEVRVQNCLV 398
>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 363
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +1
Query: 142 IIPDVYIHPXASVDSTAVIGPNVSIGTGVTIKAGVRIK 255
II +V I P A++ IGPNV IG VTI GVR++
Sbjct: 252 IIGNVLIDPSATIGKNCKIGPNVVIGPNVTIGDGVRLQ 289
Score = 33.1 bits (72), Expect = 0.044
Identities = 12/31 (38%), Positives = 23/31 (74%)
Frame = +3
Query: 264 ILENATVNEHSLIMYSVVGREASVGEWSRVE 356
IL+++ V +H+ + S+VG +++G WSR+E
Sbjct: 293 ILKSSRVRDHAWVKSSIVGWNSTLGSWSRLE 323
Score = 28.7 bits (61), Expect = 0.95
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 142 IIPDVYIHPXASVDSTAVIGPNVSIGTGVTIKAGVRIKN 258
I P I + VIGPNV+IG GV ++ +K+
Sbjct: 258 IDPSATIGKNCKIGPNVVIGPNVTIGDGVRLQRCAILKS 296
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 30.3 bits (65), Expect = 0.31
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +3
Query: 222 GRYNKSWRQNKESIILENATVNEHSLIMYSVVGREASVGEWSRVEGTP-SDPDPNKPFAK 398
G N + +S+ +++ +VN S++ S +E S G+ S ++ ++P KP +K
Sbjct: 857 GGTNSISQDTTQSLQMQSNSVNSSSMVDASK-SKEKSGGDTSALDSNAKNEPTAAKPISK 915
Query: 399 MDNRPLFN 422
+++ LFN
Sbjct: 916 LEDDALFN 923
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 29.5 bits (63), Expect = 0.54
Identities = 23/77 (29%), Positives = 36/77 (46%)
Frame = -2
Query: 490 IVSAXTTTPAPNIVIDGLSRPSVLNSGRLSILAKGLFGSGSEGVPSTRDHSPTEASRPTT 311
+ + T TP+ VID + P+ N G +I G +GS + +T HS E PTT
Sbjct: 214 VTTTLTGTPSNGTVIDTVEVPTTTNYGYTTI-TTGY--TGSTTLTTTVPHSGNETG-PTT 269
Query: 310 EYMIRECSFTVAFSSII 260
Y+ TV ++ +
Sbjct: 270 VYVETPYPTTVTTTTTV 286
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -2
Query: 448 IDGLSRPSVLNSGRLSILAKGLFGSGSEGVPSTRDH 341
+ G+SRPSV+ + L +L L G G V ST DH
Sbjct: 93 LSGISRPSVIITTALGVLRTALCG-GWVYVTSTDDH 127
>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = -3
Query: 588 LSFSKNKIKXYNMISCLKLLAKCL*GRLWSLTKSSQRVPR 469
L FSKN++K ++ ++ +LL +CL +LT S +++ R
Sbjct: 271 LCFSKNELKKHSNLTKEELLLRCL-----TLTTSCRQIKR 305
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 269 RKRDRE*ALPDHVFCCRSGS 328
R D+ L D+++CCRSGS
Sbjct: 53 RVTDKLTQLTDNIWCCRSGS 72
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 303 MYSVVGREASVGEWSRVEGTPS 368
+++ GRE VG W + G P+
Sbjct: 480 VFAACGRETRVGRWKTLRGIPN 501
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,900
Number of Sequences: 5004
Number of extensions: 57571
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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