Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0010
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0105 - 5648436-5648536,5648650-5648692,5649152-5649244,564... 49 5e-06
03_02_0495 - 8879612-8880283,8880369-8880608,8880713-8880775,888... 38 0.011
08_01_0849 - 8336065-8336736,8336812-8337051,8337143-8337205,833... 36 0.035
01_06_1334 + 36389179-36389289,36389777-36389839,36389930-363901... 36 0.035
03_02_0647 + 10154668-10156041 33 0.25
01_06_0542 + 30096277-30096340,30096444-30096529,30096810-300969... 33 0.33
11_02_0009 - 7315669-7315686,7316239-7316259,7316425-7316519,731... 30 1.7
05_06_0073 - 25368946-25369245,25369732-25370544 29 3.0
05_06_0072 + 25364218-25365021,25365374-25365673 29 3.0
06_01_0982 + 7627420-7628141,7628190-7628643,7629167-7629823,762... 29 5.3
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379... 29 5.3
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 28 9.3
03_02_0664 - 10262690-10263273,10263594-10263726,10263826-102640... 28 9.3
>03_02_0105 -
5648436-5648536,5648650-5648692,5649152-5649244,
5649424-5649553,5649631-5649747,5650667-5650715,
5651139-5651229,5651381-5651473,5651565-5651611,
5651719-5651779,5651973-5652051,5652184-5652284,
5652409-5652476,5652593-5652650
Length = 376
Score = 48.8 bits (111), Expect = 5e-06
Identities = 36/93 (38%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Frame = +1
Query: 4 TPLAGTNKLYSMQVSSWWSQVKXAG-----SAIYAN--RHCLTLHCTRDD---VCQIIPD 153
+PLAG +LY+ Q +W Q+K G S +Y + RH D II D
Sbjct: 231 SPLAGKKELYTYQTLDFWEQIKTPGMSLRCSGLYLSQFRHTSPHLLASGDGKRSATIIGD 290
Query: 154 VYIHPXASVDSTAVIGPNVSIGTGVTIKAGVRI 252
VYIHP +A IGPNVSI I AG R+
Sbjct: 291 VYIHP------SAKIGPNVSISANARIGAGARL 317
>03_02_0495 -
8879612-8880283,8880369-8880608,8880713-8880775,
8881510-8881620
Length = 361
Score = 37.5 bits (83), Expect = 0.011
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +1
Query: 10 LAGTNKLYSMQVSSWWSQVKX-----AGSAIYANRHCLTLHCTRDDVCQIIPDVYIHPXA 174
+A N L++M + +W + G +Y + ++ +V +H A
Sbjct: 202 IAADNGLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKAPAKLASGAHVLGNVLVHETA 261
Query: 175 SVDSTAVIGPNVSIGTGVTIKAGVRI 252
+ +IGP+V++G G ++AGVR+
Sbjct: 262 VIGEGCLIGPDVAVGPGCVVEAGVRL 287
Score = 32.7 bits (71), Expect = 0.33
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 264 ILENATVNEHSLIMYSVVGREASVGEWSRVE 356
++ A V +H+ I S++G ++VG W+RVE
Sbjct: 292 VMRGARVKKHACISSSIIGWHSTVGMWARVE 322
>08_01_0849 -
8336065-8336736,8336812-8337051,8337143-8337205,
8337686-8337796
Length = 361
Score = 35.9 bits (79), Expect = 0.035
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 142 IIPDVYIHPXASVDSTAVIGPNVSIGTGVTIKAGVRI 252
I+ +V +H A + +IGP+V+IG G ++ GVR+
Sbjct: 251 IVGNVLVHESAKIGEGCLIGPDVAIGPGCVVEDGVRL 287
Score = 31.9 bits (69), Expect = 0.57
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +3
Query: 264 ILENATVNEHSLIMYSVVGREASVGEWSRVE 356
++ + +H+ I S++G ++VG+W+R+E
Sbjct: 292 VMRGVRIKKHACISNSIIGWHSTVGQWARIE 322
>01_06_1334 +
36389179-36389289,36389777-36389839,36389930-36390169,
36390245-36390916
Length = 361
Score = 35.9 bits (79), Expect = 0.035
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 142 IIPDVYIHPXASVDSTAVIGPNVSIGTGVTIKAGVRI 252
I+ +V +H A + +IGP+V+IG G ++ GVR+
Sbjct: 251 IVGNVLVHESAKIGEGCLIGPDVAIGPGCVVEDGVRL 287
Score = 31.5 bits (68), Expect = 0.75
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +3
Query: 264 ILENATVNEHSLIMYSVVGREASVGEWSRVE 356
++ + +H+ I S++G ++VG+W+R+E
Sbjct: 292 VMRGVHIKKHACISNSIIGWHSTVGQWARIE 322
>03_02_0647 + 10154668-10156041
Length = 457
Score = 33.1 bits (72), Expect = 0.25
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = -2
Query: 460 PNIVIDGLSRPSVLNSGRLSILAKGLFGSGSEGVPSTRDHSPTEASRPTTEYMIRECSFT 281
P V D P+V+ GR S+LA G+G + S H E +R +
Sbjct: 363 PAAVADAGGPPAVIAGGRDSVLAVATAGAGRDRCDSQHGHYKCELARTRRARLAVASVAA 422
Query: 280 VAFSSIIDS 254
V +S +IDS
Sbjct: 423 VMYSYLIDS 431
>01_06_0542 +
30096277-30096340,30096444-30096529,30096810-30096934,
30097405-30097513,30097865-30097981,30098066-30098149,
30098795-30098914,30099416-30099502,30100160-30100237
Length = 289
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 157 YIHPXASVDSTAVIGPNVSIGTGVTIKAGVRI 252
++HP A V AV+G VSIG T+ A RI
Sbjct: 35 FVHPAAVVHPDAVVGQGVSIGPFCTVGASARI 66
>11_02_0009 -
7315669-7315686,7316239-7316259,7316425-7316519,
7317445-7317502,7317701-7317792,7318101-7318227
Length = 136
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 344 VACRRNSFRS*SEQTLRQDGQPTAIQYG 427
+AC + ++S T R++G+P AIQYG
Sbjct: 74 IACFFHRYKSEQPSTYRKNGKPAAIQYG 101
>05_06_0073 - 25368946-25369245,25369732-25370544
Length = 370
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 333 VGEWSRVEGTPSDPDPNKPFAKMDNRPLFNTDGRLNPSITILGAGVVVXAETIL 494
VGEW R + P + DP F + R L+ GR ++ G+V + I+
Sbjct: 140 VGEWLRRDREPPEEDPYCIFKQAHGRSLWELAGRDAAFDALINDGMVSDSRVIM 193
>05_06_0072 + 25364218-25365021,25365374-25365673
Length = 367
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 333 VGEWSRVEGTPSDPDPNKPFAKMDNRPLFNTDGRLNPSITILGAGVVVXAETIL 494
VGEW R + P + DP F + R L+ GR ++ G+V + I+
Sbjct: 137 VGEWLRRDREPPEEDPYCIFKQAHGRSLWELAGRDAAFDALINDGMVSDSRVIM 190
>06_01_0982 +
7627420-7628141,7628190-7628643,7629167-7629823,
7629975-7630469
Length = 775
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -2
Query: 421 LNSGRLSILAKGLFGSGSEGVPSTRDHSPTEASRPTTEYMIRECSFTVA 275
L++GR+ L L+G G+ VP TR S+ +EY R+ T+A
Sbjct: 271 LSAGRIMQLMSELYG-GARNVPYTRKDISNFKSKLGSEYRCRDIPETIA 318
>05_04_0206 +
19034259-19035462,19036870-19037045,19037752-19037975,
19038133-19038914,19039337-19039494
Length = 847
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 252 KESIILENATVNEHSLIMYSVVGREASVGEWSRVEGTPSDPDPNKP 389
K ++ NA HS S+ A++ E++ EG P P P +P
Sbjct: 25 KSAVQARNAFAAAHSAYAMSLRDTGAALSEFAHGEGVPPPPPPPQP 70
>08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 104 QCLFAYIAEPAXFTWDHQLDTCIEYNLLVP 15
+ +F I +TWD QL+T ++ +L+VP
Sbjct: 1439 ELVFGIIDYLRQYTWDKQLETWVKSSLVVP 1468
>03_02_0664 -
10262690-10263273,10263594-10263726,10263826-10264016,
10264094-10264219,10264537-10264616,10265312-10265375,
10265470-10265554
Length = 420
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 264 LLILYSDASFYCNARTYGDVRP 199
LLI+ + +FYC A+ G VRP
Sbjct: 82 LLIISAAGAFYCRAKKMGTVRP 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,096,120
Number of Sequences: 37544
Number of extensions: 371868
Number of successful extensions: 1048
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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