Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0010
(758 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74910.3 68414.m08687 ADP-glucose pyrophosphorylase family pr... 61 7e-10
At1g74910.2 68414.m08686 ADP-glucose pyrophosphorylase family pr... 61 7e-10
At1g74910.1 68414.m08685 ADP-glucose pyrophosphorylase family pr... 61 7e-10
At2g04650.1 68415.m00474 ADP-glucose pyrophosphorylase family pr... 58 5e-09
At4g30570.1 68417.m04338 GDP-mannose pyrophosphorylase, putative... 40 0.001
At3g55590.1 68416.m06173 GDP-mannose pyrophosphorylase, putative... 36 0.029
At4g29540.1 68417.m04213 bacterial transferase hexapeptide repea... 35 0.067
At2g39770.1 68415.m04883 GDP-mannose pyrophosphorylase (GMP1) i... 33 0.16
At2g19660.1 68415.m02297 DC1 domain-containing protein contains ... 28 5.9
At1g28080.1 68414.m03437 expressed protein 28 5.9
At2g40070.1 68415.m04923 expressed protein 28 7.7
>At1g74910.3 68414.m08687 ADP-glucose pyrophosphorylase family
protein contains Pfam profile PF00483: Nucleotidyl
transferase; low similarity to mannose-1-phosphate
guanylyltransferase [Hypocrea jecorina] GI:3323397
Length = 387
Score = 61.3 bits (142), Expect = 7e-10
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Frame = +1
Query: 4 TPLAGTNKLYSMQVSSWWSQVKXAG-----SAIYANRHCLT---LHCTRDDVCQ--IIPD 153
+PLAG +LY+ + +W Q+K G S +Y ++ LT L + D +I D
Sbjct: 241 SPLAGKKRLYTYETMDFWEQIKSPGMSLRCSGLYLSQFRLTSPQLLASGDGTRSAIVIGD 300
Query: 154 VYIHPXASVDSTAVIGPNVSIGTGVTIKAGVRI 252
VYIHP A V TA IGPNVSI + GVR+
Sbjct: 301 VYIHPSAKVHPTAKIGPNVSISANARVGPGVRL 333
Score = 34.3 bits (75), Expect = 0.089
Identities = 12/32 (37%), Positives = 25/32 (78%)
Frame = +3
Query: 261 IILENATVNEHSLIMYSVVGREASVGEWSRVE 356
IIL++ + E++++ ++VG ++S+G WSRV+
Sbjct: 337 IILDDVEIMENAVVTNAIVGWKSSIGRWSRVQ 368
>At1g74910.2 68414.m08686 ADP-glucose pyrophosphorylase family
protein contains Pfam profile PF00483: Nucleotidyl
transferase; low similarity to mannose-1-phosphate
guanylyltransferase [Hypocrea jecorina] GI:3323397
Length = 415
Score = 61.3 bits (142), Expect = 7e-10
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Frame = +1
Query: 4 TPLAGTNKLYSMQVSSWWSQVKXAG-----SAIYANRHCLT---LHCTRDDVCQ--IIPD 153
+PLAG +LY+ + +W Q+K G S +Y ++ LT L + D +I D
Sbjct: 241 SPLAGKKRLYTYETMDFWEQIKSPGMSLRCSGLYLSQFRLTSPQLLASGDGTRSAIVIGD 300
Query: 154 VYIHPXASVDSTAVIGPNVSIGTGVTIKAGVRI 252
VYIHP A V TA IGPNVSI + GVR+
Sbjct: 301 VYIHPSAKVHPTAKIGPNVSISANARVGPGVRL 333
Score = 34.3 bits (75), Expect = 0.089
Identities = 12/32 (37%), Positives = 25/32 (78%)
Frame = +3
Query: 261 IILENATVNEHSLIMYSVVGREASVGEWSRVE 356
IIL++ + E++++ ++VG ++S+G WSRV+
Sbjct: 337 IILDDVEIMENAVVTNAIVGWKSSIGRWSRVQ 368
>At1g74910.1 68414.m08685 ADP-glucose pyrophosphorylase family
protein contains Pfam profile PF00483: Nucleotidyl
transferase; low similarity to mannose-1-phosphate
guanylyltransferase [Hypocrea jecorina] GI:3323397
Length = 415
Score = 61.3 bits (142), Expect = 7e-10
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Frame = +1
Query: 4 TPLAGTNKLYSMQVSSWWSQVKXAG-----SAIYANRHCLT---LHCTRDDVCQ--IIPD 153
+PLAG +LY+ + +W Q+K G S +Y ++ LT L + D +I D
Sbjct: 241 SPLAGKKRLYTYETMDFWEQIKSPGMSLRCSGLYLSQFRLTSPQLLASGDGTRSAIVIGD 300
Query: 154 VYIHPXASVDSTAVIGPNVSIGTGVTIKAGVRI 252
VYIHP A V TA IGPNVSI + GVR+
Sbjct: 301 VYIHPSAKVHPTAKIGPNVSISANARVGPGVRL 333
Score = 34.3 bits (75), Expect = 0.089
Identities = 12/32 (37%), Positives = 25/32 (78%)
Frame = +3
Query: 261 IILENATVNEHSLIMYSVVGREASVGEWSRVE 356
IIL++ + E++++ ++VG ++S+G WSRV+
Sbjct: 337 IILDDVEIMENAVVTNAIVGWKSSIGRWSRVQ 368
>At2g04650.1 68415.m00474 ADP-glucose pyrophosphorylase family
protein contains Pfam profile PF00483: Nucleotidyl
transferase; low similarity to mannose-1-phosphate
guanylyltransferase [Hypocrea jecorina] GI:3323397
Length = 406
Score = 58.4 bits (135), Expect = 5e-09
Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Frame = +1
Query: 4 TPLAGTNKLYSMQVSSWWSQVKXAG-----SAIYANR------HCLTLHCTRDDVCQIIP 150
+PLAG +LY+ + +W Q+K G SA+Y ++ H L + II
Sbjct: 231 SPLAGKKQLYTYENKDFWEQIKTPGKSLKCSALYLSQFRETSPHILASGDGTNRKPTIIG 290
Query: 151 DVYIHPXASVDSTAVIGPNVSIGTGVTIKAGVRI 252
DVYIHP + TA IGPNVSI V + GVR+
Sbjct: 291 DVYIHPSVKLHPTAKIGPNVSISANVRVGPGVRL 324
Score = 37.1 bits (82), Expect = 0.013
Identities = 12/34 (35%), Positives = 27/34 (79%)
Frame = +3
Query: 261 IILENATVNEHSLIMYSVVGREASVGEWSRVEGT 362
IIL++ + E+++++ S++G ++S+G WSRV+ +
Sbjct: 328 IILDDVEIKENAVVINSIIGWKSSIGRWSRVQAS 361
>At4g30570.1 68417.m04338 GDP-mannose pyrophosphorylase, putative
similar to GDP-mannose pyrophosphorylase [Arabidopsis
thaliana] GI:3598958; contains Pfam profile PF00483:
Nucleotidyl transferase
Length = 331
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Frame = +1
Query: 10 LAGTNKLYSMQVSSWWSQVKXAGSAIYANRHCLTLHCTRDDVCQ-------IIPDVYIHP 168
+A KLY+M + +W + I R + L+ R+ Q II +V +H
Sbjct: 183 IASEKKLYAMVLPGFWMDIGQPKDYITGQR--MYLNSLREKTPQELATGDNIIGNVLVHE 240
Query: 169 XASVDSTAVIGPNVSIGTGVTIKAGVRI 252
A + +IGP+V IG G I +GVR+
Sbjct: 241 SAVIGEGCLIGPDVVIGPGCVIDSGVRL 268
Score = 31.9 bits (69), Expect = 0.48
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 264 ILENATVNEHSLIMYSVVGREASVGEWSRV 353
++ + EH+ I S+VG +++VG W+RV
Sbjct: 273 VMRGVWIKEHACISNSIVGWDSTVGRWARV 302
>At3g55590.1 68416.m06173 GDP-mannose pyrophosphorylase, putative
strong similarity to GDP-mannose pyrophosphorylase from
Arabidopsis thaliana [GI:3598958], Pichia angusta
[GI:7331158]; contains Pfam profile PF00483 Nucleotidyl
transferase
Length = 364
Score = 35.9 bits (79), Expect = 0.029
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +1
Query: 10 LAGTNKLYSMQVSSWWSQVKXAGSAIYANRHCL-TLHCTRDDVC----QIIPDVYIHPXA 174
+A KLY+M + +W + I R L +L I+ +V + A
Sbjct: 205 IAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSLRKKSPSKLATGPHILGNVLVDETA 264
Query: 175 SVDSTAVIGPNVSIGTGVTIKAGVRIKN 258
+ +IGPNV+IG G +++GVR+ +
Sbjct: 265 EIGEGCLIGPNVAIGPGCVVESGVRLSH 292
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 264 ILENATVNEHSLIMYSVVGREASVGEWSRVE 356
++ V ++ I S++G ++VG+W+RVE
Sbjct: 295 VMRGVHVKRYACISSSIIGWHSTVGQWARVE 325
>At4g29540.1 68417.m04213 bacterial transferase hexapeptide
repeat-containing protein similar to
UDP-acetylglucosamine acyltransferase [Acinetobacter sp.
M-1] GI:13358850; contains Pfam profile PF00132:
Bacterial transferase hexapeptide (three repeats)
Length = 334
Score = 34.7 bits (76), Expect = 0.067
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +1
Query: 151 DVYIHPXASVDSTAVIGPNVSIGTGVTIKAGVRIKN 258
+V IHP A V AVIG VS+G TI + V++ N
Sbjct: 38 EVLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGN 73
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 121 TRDDVCQIIPDVYIHPXASVDSTAVIGPNVSIGTGVTIKAGVRI 252
+RD I P +HP A + +GP +IG+ V + G ++
Sbjct: 34 SRDSEVLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKL 77
>At2g39770.1 68415.m04883 GDP-mannose pyrophosphorylase (GMP1)
identical to GDP-mannose pyrophosphorylase from
Arabidopsis thaliana [GI:3598958]; updated per Conklin
PL et al, PNAS 1999, 96(7):4198-203
Length = 361
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +1
Query: 142 IIPDVYIHPXASVDSTAVIGPNVSIGTGVTIKAGVRI 252
I+ +V + A++ +IGP+V+IG G +++GVR+
Sbjct: 251 IVGNVLVDETATIGEGCLIGPDVAIGPGCIVESGVRL 287
Score = 31.9 bits (69), Expect = 0.48
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +3
Query: 264 ILENATVNEHSLIMYSVVGREASVGEWSRVE 356
++ + +H+ I S++G ++VG+W+R+E
Sbjct: 292 VMRGVRIKKHACISSSIIGWHSTVGQWARIE 322
>At2g19660.1 68415.m02297 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 662
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +3
Query: 300 IMYSVVGREASVGEWSRVEGTPSDPDPNKPFAKMDNRPL 416
+++S + V + +EGTP +P+ + PF +D+ +
Sbjct: 331 VVHSRCATDEDVWDMIELEGTPEEPEEDAPFEVIDDNTI 369
>At1g28080.1 68414.m03437 expressed protein
Length = 291
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 415 SGRLSILAKGLFGSGSEGVPSTRDHSPTE 329
SGR + L LF S S V S+ DH PT+
Sbjct: 111 SGRENSLELSLFSSSSTAVSSSIDHLPTQ 139
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -2
Query: 484 SAXTTTPAPNIVIDGLSRPSVLNS-GRLSILAKGLFGSGSEGVPSTRDHSPTEASRPTT 311
S+ +TP + +RPS+ NS +S K S S + S+R +PT AS+PTT
Sbjct: 202 SSRPSTPTSRATVSSATRPSLTNSRSTVSATTKPTPMSRSTSLSSSR-LTPT-ASKPTT 258
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,276,531
Number of Sequences: 28952
Number of extensions: 298313
Number of successful extensions: 796
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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