Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0007
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    28   1.5  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   3.5  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    26   4.7  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    26   4.7  

>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 375 IFKSGYHQFLGFRAH*VLMSSVREFLGLLRHLYQR 271
           + +SG+ Q LG       M S REF  + +HLY +
Sbjct: 117 LLESGFSQPLGLNNR--FMPSTREFAAIFKHLYNK 149


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 261  AGRSAGKDVEAAPEIPEHYSSKLNVPEN 344
            AG  AG  +E  PEIP+H     N   N
Sbjct: 1400 AGALAGPTIEVDPEIPDHLIKTWNTTWN 1427


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 498 IESINKKGIS*TNLLHTKINLKNSIIYVQNLSYLSPLREISIFKSGYHQFLG 343
           +ES NKK  +  NLL  K+N KN+       S+ + +RE  + K   +  LG
Sbjct: 748 LESKNKKLENDLNLLTEKLNKKNA----DTESFKNTIREAELSKKALNDNLG 795


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = -1

Query: 374 YLRAAITNFWVFGHIKF**VVFGNFWGCFDIFTSASSG-----GQALKASAKSGLISSRG 210
           Y  A I  F  F  +KF  +  G + GCF +F  AS       G AL +S  SG+I+  G
Sbjct: 149 YAEAGIKGF--FPGLKFSVIQIGPYAGCFFMFYRASEAVLSPLGLAL-SSTLSGVIAGAG 205

Query: 209 VSPLL 195
              ++
Sbjct: 206 SKAIM 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,052
Number of Sequences: 5004
Number of extensions: 50831
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)