Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0007
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0437 - 19084990-19087695                                         31   0.91 
07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451     28   6.4  
04_03_0015 + 9407635-9407673,9407936-9408014,9408499-9408617,940...    28   6.4  

>12_02_0437 - 19084990-19087695
          Length = 901

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = -3

Query: 456 LHTKINLKNSIIYVQNLSYLSPLREISI 373
           LHT   +K S   VQNLSYL+ LR +SI
Sbjct: 677 LHTLKEIKASKNLVQNLSYLTQLRSLSI 704


>07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451
          Length = 511

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 264 GRSAGKDVEAAP-EIPEHYSSKLNVPENPEIGDSR 365
           GR A K  EAAP   P    S+ +VP  P  GD R
Sbjct: 18  GREARKSKEAAPPREPRRARSRSHVPPPPGAGDGR 52


>04_03_0015 +
           9407635-9407673,9407936-9408014,9408499-9408617,
           9408694-9408773,9409803-9409872,9410623-9410700,
           9410743-9410871
          Length = 197

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -3

Query: 417 VQNLSYLSPLREISIFKSGYHQFLGFRAH*VLMSSVREFLGLLRHLYQRFFRRAGVE 247
           V+  S L  +   S +K GY   +G   H  ++SS    L   RHL   F   AG+E
Sbjct: 63  VRYASNLGGVFSDSPYKEGYDYIIGTSEHGKIISSSELILPSFRHLLIAFGGLAGLE 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,555,495
Number of Sequences: 37544
Number of extensions: 285956
Number of successful extensions: 630
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)