Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0007
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     25   0.54 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.8  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 444 INLKNSII-YVQNLSYLSPLREISIFKSGYHQFLGFRAH*VLMSSVREFL 298
           +NL++S+  Y+ +L  +     I +    YH ++G  +  +++   REF+
Sbjct: 98  LNLRDSVTKYLIHLKEIEDTEPILLIAYIYHLYMGLLSGGIILRKKREFM 147


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 252 RLPAGRSAGKDVEAAPEIPEHYSSKLN 332
           R PAG    +DV     + ++Y + +N
Sbjct: 84  RSPAGSVHSRDVNVRAVVAQYYDTDVN 110


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 648 EVNLTWPQFMVTXXYX*KIPNH 713
           E N+TWP  + T      IP H
Sbjct: 392 ESNITWPGRLQTKPEGFMIPTH 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,855
Number of Sequences: 438
Number of extensions: 3813
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)