Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0007
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19300.1 68418.m02300 expressed protein contains Pfam profile...    28   7.1  
At2g22530.1 68415.m02672 phosphatidylinositolglycan-related simi...    27   9.4  

>At5g19300.1 68418.m02300 expressed protein contains Pfam profile
           PF02598: Uncharacterized ACR, COG2106
          Length = 398

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 417 VQNLSYLSPLREISIFKSGYHQFLGFRAH*VLMSSVREFLGLLRHLYQRFFRRAGVE 247
           V+  S LS + +   F+ GY   +G   H +++SS    +   RHL   F   AG+E
Sbjct: 285 VRYASQLSSVFKECPFEGGYDYLIGTSEHGLVISSSELKIPTFRHLLIAFGGLAGLE 341


>At2g22530.1 68415.m02672 phosphatidylinositolglycan-related similar
           to Pig-o [Mus musculus] GI:8099973
          Length = 897

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 455 NKLV*EIPFLFIDSMIIVASLNHCNFNESDFYIFHFL*HNFFNMGIF 595
           N L  E  F+F   +I+V S+   +  E + YI+HF+   F  + +F
Sbjct: 511 NLLNLEEVFIFALLLILVISMGSSSMVEEEHYIWHFMVSTFHLLLLF 557


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,157,986
Number of Sequences: 28952
Number of extensions: 248190
Number of successful extensions: 566
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)