Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0004
(841 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 72 5e-13
SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21) 33 0.38
SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23) 30 2.7
SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_53645| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032) 29 4.7
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0) 29 6.2
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 28 8.2
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01) 28 8.2
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 72.1 bits (169), Expect = 5e-13
Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Frame = +1
Query: 10 VDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIXAE--KE 183
V+T EK LP+ + +A EK + + F G+E F ++LKH ET EKNPLPD I AE E
Sbjct: 465 VETKEKNTLPTKDTIADEK-RTAPFSGVEVFQKNKLKHVETLEKNPLPDAQNIRAEMMPE 523
Query: 184 KNKFLNGIENFDPTKLKHTETCEKTRSPQR 273
+ + FD +KLKH ET EK P +
Sbjct: 524 VLPDRSEVAKFDTSKLKHVETKEKVVMPTK 553
Score = 69.7 bits (163), Expect = 3e-12
Identities = 40/95 (42%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Frame = +1
Query: 4 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIE--KFDSSQLKHTETQEKNPLPDKDAIXAE 177
+ V T EK LPS E + E D E F+ S+L+H ET+EKN LP KD I E
Sbjct: 423 KHVQTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADE 482
Query: 178 KEKNKFLNGIENFDPTKLKHTETCEKTRSPQRTSL 282
K F +G+E F KLKH ET EK P ++
Sbjct: 483 KRTAPF-SGVEVFQKNKLKHVETLEKNPLPDAQNI 516
Score = 68.5 bits (160), Expect = 6e-12
Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Frame = +1
Query: 4 RDVDTNEKIVLPSAEDVATEKTQKSLFD--GIEKFDSSQLKHTETQEKNPLPDKDAIXAE 177
+ V+T EK LPSA + E + L D + FD+S+LKH E QEKNPLP KD I E
Sbjct: 652 KHVETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDITTE 711
Query: 178 KEKNKFLNGIENFDPTKLKHTETCEKTRSPQRTSLSK 288
+ + ++ FD +KLKH +T EK P ++++
Sbjct: 712 STETR--AEVKTFDHSKLKHVQTEEKNPLPDAKTIAQ 746
Score = 65.3 bits (152), Expect = 6e-11
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Frame = +1
Query: 4 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIXAEKE 183
+ V T EK ++PS ED+ E ++ FD S+LKH ET EKNPLP + E
Sbjct: 616 KHVTTQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKHVETVEKNPLPSAAVLKEEMR 673
Query: 184 KNKF--LNGIENFDPTKLKHTETCEKTRSPQRTSLS 285
++ + +FD +KLKH E EK P + ++
Sbjct: 674 PEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDIT 709
Score = 64.5 bits (150), Expect = 1e-10
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Frame = +1
Query: 4 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIXAEK- 180
+ V+T EK+V+P+ + + E ++ FD S+LKH TQEKNPLP + E
Sbjct: 540 KHVETKEKVVMPTKDVIEAEAIDSRA--EVKSFDHSKLKHVVTQEKNPLPTPQTLHEELI 597
Query: 181 EKNK-FLNGIENFDPTKLKHTETCEKTRSPQRTSLSK 288
KNK + + +FD TKLKH T EK+ P + + +
Sbjct: 598 PKNKPDRSEVASFDHTKLKHVTTQEKSIMPSQEDIKE 634
Score = 64.1 bits (149), Expect = 1e-10
Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Frame = +1
Query: 4 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIE--KFDSSQLKHTETQEKNPLPDKDAIXAE 177
+ V+T EK LP A+++ E + L D E KFD+S+LKH ET+EK +P KD I AE
Sbjct: 500 KHVETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559
Query: 178 KEKNKFLNGIENFDPTKLKHTETCEKTRSPQRTSL 282
++ +++FD +KLKH T EK P +L
Sbjct: 560 AIDSR--AEVKSFDHSKLKHVVTQEKNPLPTPQTL 592
Score = 59.3 bits (137), Expect = 4e-09
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Frame = +1
Query: 13 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIXAEKEKNK 192
DT ++I P +E + K + KFD++ LKH +T+EKN LP + I E + ++
Sbjct: 389 DTPQQI-WPGSEVAYVDGGSKPDVSEVAKFDAANLKHVQTKEKNTLPSDETIKQELQPDE 447
Query: 193 FLN--GIENFDPTKLKHTETCEKTRSPQRTSLSKRNQLEP 306
F + +++F+ +KL+H ET EK P + +++ + P
Sbjct: 448 FPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEKRTAP 487
Score = 55.6 bits (128), Expect = 5e-08
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Frame = +1
Query: 4 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIE--KFDSSQLKHTETQEKNPLPDKDAIXAE 177
+ V T EK LP+ + + E K+ D E FD ++LKH TQEK+ +P ++ I E
Sbjct: 576 KHVVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKSIMPSQEDIKEE 635
Query: 178 KEKNKFLNGIENFDPTKLKHTETCEKTRSPQRTSLSKRNQLEPL 309
++ +++FD +KLKH ET EK P L + + E L
Sbjct: 636 AVDSR--AEVKSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVL 677
Score = 55.6 bits (128), Expect = 5e-08
Identities = 26/59 (44%), Positives = 37/59 (62%)
Frame = +1
Query: 4 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIXAEK 180
+ V+ EK LP+ +D+ TE T+ ++ FD S+LKH +T+EKNPLPD I EK
Sbjct: 692 KHVEVQEKNPLPTKDDITTESTETRA--EVKTFDHSKLKHVQTEEKNPLPDAKTIAQEK 748
>SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)
Length = 900
Score = 32.7 bits (71), Expect = 0.38
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 7 DVDTNEKIVLPSAEDVATEKTQKSLFDG-IEKFDSSQLKHTETQEKNPLPDKDAIXAEKE 183
DV + P+ A EKT K + DG +EK+ + +T + L D D E+E
Sbjct: 341 DVIGKPPAIPPAQVQAAEEKTPKDIIDGLLEKYKEIGSQMADTSADDGLDDDD---VEEE 397
Query: 184 KNKFLNGIENFDPTKLK 234
+ L+ + F TK K
Sbjct: 398 DDDVLDEADRFRDTKRK 414
>SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23)
Length = 385
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 34 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLP 153
L S D EKT D +E+F S +H T +KNPLP
Sbjct: 194 LSSRSDHVQEKT-----DRLEQFSSQTGRHINTTKKNPLP 228
>SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 118 KHTETQEKNPLPDKDAIXAEKEKNKFLNGIENFDPTKLKHTETCEKT 258
+HTE + +P P K I E +++ + I+ KH+ +CE+T
Sbjct: 212 RHTENAKSSPDPIKSEIDGEHSEDEKEHKIKVCPLVDKKHSHSCERT 258
>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1028
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 363 LM*VRSICVVHYKFYFCFCTMATLPG 440
L+ V IC VH FY+C C +++ G
Sbjct: 55 LVAVLRICSVHLDFYYCTCVWSSMAG 80
>SB_53645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 1 GRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKF-DSSQLKHTET-QEKNP 147
G VD +E +++ S+ D + EK S +EK+ S Q K T++ QEK P
Sbjct: 50 GEPVDDHEVVIVVSSHDSSEEKRHLSTRYNLEKWPGSDQEKWTDSFQEKIP 100
>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2916
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +3
Query: 84 RRYREV*FEPAEAHRDSGEEPASGQRRYXSGEGKEQIPERHRELRS 221
RR +E+ AE H+ EPA + R+ SGE E+ H E++S
Sbjct: 35 RREQEIIELKAELHKRDDLEPAGQRHRHDSGESFEE----HEEIKS 76
>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
Length = 1293
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +3
Query: 84 RRYREV*FEPAEAHRDSGEEPASGQRRYXSGEGKEQIPERHRELRS 221
RR +E+ AE H+ EPA + R+ SGE E+ H E++S
Sbjct: 11 RREQEIIELKAELHKRDDLEPAGQRHRHDSGESFEE----HEEIKS 52
>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
Length = 644
Score = 28.7 bits (61), Expect = 6.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 320 VTRKCISLVSPYFNIDVSQIDL 385
+ KC L+SPY ++D+ DL
Sbjct: 13 IAAKCTQLISPYLDLDIKYFDL 34
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 43 AEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIXAEK 180
++D EKT+ S+ + + DSS T+EK +KD E+
Sbjct: 1546 SDDGTDEKTEDSMQEDAKDLDSSNTASDTTKEKGKNKEKDKTVLER 1591
>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
Length = 590
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 105 FEPAEAHRDSGEEPASGQRRYXSGEG 182
FEP E H DSG+E Y EG
Sbjct: 266 FEPMEIHDDSGDEDVDSDDDYDDREG 291
>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 942
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/70 (21%), Positives = 35/70 (50%)
Frame = +1
Query: 127 ETQEKNPLPDKDAIXAEKEKNKFLNGIENFDPTKLKHTETCEKTRSPQRTSLSKRNQLEP 306
E ++ +PL +D + ++++ + N ++ KH+ + +R Q+ S S+R+ P
Sbjct: 218 ERKQSHPLSSRDQTTRQSKRSRSRSATLNQKRSRSKHSRSRSNSRD-QKRSRSRRSHTPP 276
Query: 307 LLYNSYSQMY 336
S++Y
Sbjct: 277 SEERPKSRLY 286
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,128,852
Number of Sequences: 59808
Number of extensions: 398882
Number of successful extensions: 1236
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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