Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0004
         (841 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09950.1 68417.m01628 avirulence-responsive family protein / ...    30   2.2  
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01...    30   2.2  
At5g46810.1 68418.m05767 expressed protein contains similarity t...    29   3.8  
At4g14150.1 68417.m02183 phragmoplast-associated kinesin-related...    29   5.1  
At3g57780.1 68416.m06436 expressed protein                             29   5.1  
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d...    28   6.7  
At5g06430.1 68418.m00720 thioredoxin-related contains weak simil...    28   6.7  
At4g13780.1 68417.m02137 methionine--tRNA ligase, putative / met...    28   8.9  
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof...    28   8.9  

>At4g09950.1 68417.m01628 avirulence-responsive family protein /
           avirulence induced gene (AIG1) family protein similar to
           AIG1 protein SP:P54120 [Arabidopsis thaliana]; contains
           Pfam PF04548: AIG1 family;
          Length = 336

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
 Frame = +1

Query: 61  EKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIXAEKEKNKFLNGIENFDPTKLK-- 234
           EK+   + +GI++  S+QLK +    K  L    A   E EK   +N I+     +++  
Sbjct: 254 EKSHNEMLEGIKEKISNQLKESLEDVKEQLAKAQAEREETEKK--MNEIQKLSSDEIRRL 311

Query: 235 --HTETCEKTRSPQRTSLSKR 291
                  EK  +  RT L+K+
Sbjct: 312 REQLNKAEKETASLRTELNKK 332


>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
            reticulocyte binding protein; contains TIGRFAM TIGR00864:
            polycystin cation channel protein; similar to
            fimbriae-associated protein Fap1 [Streptococcus
            parasanguinis] (GI:3929312)
          Length = 1498

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +1

Query: 106  SSQLKHTETQEKNPLPDKDAIXAEKEKNKFLNGIENFDPTKLKHTETCEKTRSPQRTSLS 285
            + QLKH E Q      ++DA+ A+ +K + +   +++D   + +     + RS ++   S
Sbjct: 831  AEQLKHAEEQVDQKTQNRDALRADIQKIRAI--CKDYD---ISYKAVMAEERSARKAMHS 885

Query: 286  KRNQLEPL 309
            KR ++E L
Sbjct: 886  KRQEIEAL 893


>At5g46810.1 68418.m05767 expressed protein contains similarity to
           carboxyl-terminal proteinase contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 354

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 340 RDTFASNCYKVVVQADFSCSMTSFVGSGFFRTS 242
           +DTF S CY +  +         F+G+GF  TS
Sbjct: 175 QDTFESGCYNIKCKGFVQIDRRLFLGAGFANTS 207


>At4g14150.1 68417.m02183 phragmoplast-associated kinesin-related
            protein (PAKRP1)
          Length = 1292

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
 Frame = +1

Query: 34   LPSAEDVATEKTQKSLFDGI---EKFDSSQLKHTETQEKNPLPDKDAIXAEKEKNKFLNG 204
            +P A+ ++ E T++ L       E+FD+ Q+      +  P+ + +   AEK KN+    
Sbjct: 794  IPGADAISEENTKEFLCCKCKCREQFDAQQMGDMPNLQLVPVDNSEV--AEKSKNQVPKA 851

Query: 205  IENFDPTKLKHTETCEKTRSPQRTSLSKRNQL 300
            +E      ++     E+  + Q + +++ N+L
Sbjct: 852  VEKVLAGSIRREMALEEFCTKQASEITQLNRL 883


>At3g57780.1 68416.m06436 expressed protein
          Length = 670

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 67  TQKSLFDGIEKFDSSQLKHTETQEK-NPLPDKDAIXAEKEKNKFLNGIENFDPTKLKHTE 243
           TQ  L D  +   +   + TE +E  N L   D    EKE++K L+ I +     +   E
Sbjct: 58  TQSKLSDDDDHAVNDSSEKTEKEETINGLACDDEDEEEKEESKELDAIAHEKTDSVSSPE 117

Query: 244 TCE 252
           TCE
Sbjct: 118 TCE 120


>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
           domain PF04931: DNA polymerase V
          Length = 1306

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 124 TETQEKNPLPDKDAIXAEKEKNKFLNGIENFD 219
           TE  E + LPD   +  +K K + +N + N+D
Sbjct: 12  TELVENDNLPDSSIVKKKKSKTEKMNTVANYD 43


>At5g06430.1 68418.m00720 thioredoxin-related contains weak
           similarity to Swiss-Prot:Q9SEU7 thioredoxin M-type 3,
           chloroplast precursor (TRX-M3) [Arabidopsis thaliana]
          Length = 194

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
 Frame = -1

Query: 238 CASA*WD--RSSRCRSGICSFPSPLX*RLCPEAGSSPESRCASAGSNQTSRYRRIKTSGS 65
           C    WD  +  +  S +C F  P   R     GS   S   S G N   R ++   S S
Sbjct: 19  CLKWPWDSNKQPKSSSSVCDFQGPWLFRSMQTIGSIALSSLTSFGQNPNFRPKKKPLSSS 78

Query: 64  SQWQRLQQTEA 32
            Q +  Q+  A
Sbjct: 79  EQGEAEQRAFA 89


>At4g13780.1 68417.m02137 methionine--tRNA ligase, putative /
           methionyl-tRNA synthetase, putative / MetRS, putative
           similar to methionyl-tRNA synthetase [Oryza sativa]
           GI:4091008; contains Pfam profiles PF00133: tRNA
           synthetases class I (I, L, M and V), PF01588: Putative
           tRNA binding domain
          Length = 797

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +1

Query: 31  VLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD--KDAIXAEKEKNKFL 198
           V+P A D  +    KSL + +EKF +   ++ E  EK  L    K A+    E N +L
Sbjct: 427 VIPDAHDAESHSLTKSLAEKVEKFVA---EYVEAMEKVKLKQGLKTAMLISSEGNYYL 481


>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 715

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 46  EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIXAEKEKN 189
           EDV  EK      D +++ D  Q +   ++EK    +KD    EKEK+
Sbjct: 642 EDVVQEKDGDQEEDVVQEKDGDQEEDGVSKEKEQEKEKDPKEKEKEKD 689


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,624,348
Number of Sequences: 28952
Number of extensions: 266611
Number of successful extensions: 802
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)