Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0003
         (854 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)                       32   0.68 
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)                      29   3.6  
SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_40820| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   3.6  
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.8  
SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_4273| Best HMM Match : DUF836 (HMM E-Value=2.6)                     28   8.4  

>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 2538

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 462 YETLAALLKEYLDGLMTSWAHFAALITDFFEKHKPELQEFTNVIHRYIQRSNP 620
           Y  L+  L +Y D ++ S++   A+      KHK EL    N +H Y   S P
Sbjct: 660 YTKLSLTLGDYED-VLVSYSESPAVFWCQLLKHKAELDSIMNALHEYCANSGP 711


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 23/84 (27%), Positives = 37/84 (44%)
 Frame = +3

Query: 339  FDTIYKGTEPIVEXXINTYVETVKKIAEXYXXQLEPQVRQLYETLAALLKEYLDGLMTSW 518
            FD +Y+    ++E     YV+ V+ + E      +P       T AA L+  LD L TSW
Sbjct: 5340 FDCVYQDFMVVIETRQKIYVQIVE-VVENLIDTADP-------TTAASLQRQLDELKTSW 5391

Query: 519  AHFAALITDFFEKHKPELQEFTNV 590
                +   +  EK +  L   T++
Sbjct: 5392 EQVTSRAAEESEKLEQALTNATSL 5415


>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
          Length = 695

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 107 KK*LKFSLDSP*SLLTRLSCRKSAXWAMFFXSPD 6
           K  L+  +D P S + RLSC K   WA+ + +P+
Sbjct: 82  KSRLQKHVDKPGSYIFRLSCTKLGQWAIGYVTPE 115


>SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 107 KK*LKFSLDSP*SLLTRLSCRKSAXWAMFFXSPD 6
           K  L+  +D P S + RLSC K   WA+ + +P+
Sbjct: 291 KSRLQKHVDKPGSYIFRLSCTKLGQWAIGYVTPE 324


>SB_40820| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 526

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +1

Query: 25  IAHXALFLQDNLVKSDYGLSKENFNYFLNALKNDLDTLAERIKEKSEKAGQ 177
           + H  +  +DN++  D     EN    +   +ND D L  R+++  +K+G+
Sbjct: 247 VEHYRVIFKDNMLTVDEEEYFENLTKLVEHYQNDSDGLCTRLRQPVKKSGR 297


>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = +2

Query: 140  LSASKKKVKRPARKFQRYPKKQLLTSRKSMKTSA 241
            +  S+K+V+R +RK  RY +KQ   SRK +++S+
Sbjct: 1215 VECSRKQVRR-SRKQARYSRKQARISRKQIRSSS 1247


>SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +1

Query: 58  LVKSDYGLSKENFNYFLNALKNDLDTLAERIKEKSEKAGQEISTISQKTAP 210
           L+ + Y LS  +  +FLN ++  +  +     ++ E+ G+EI  +S  + P
Sbjct: 32  LLAATYALSYFSRTFFLNFVELQIGIMMGENNDRQEELGREIHALSSASKP 82


>SB_4273| Best HMM Match : DUF836 (HMM E-Value=2.6)
          Length = 217

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 145 RIKEKSEKAGQEISTISQKTAPYFKKIDEDFRREWSNFTRK 267
           R KE   K   E+  IS+ T    KKI+ +  +E  NFT+K
Sbjct: 149 REKECCLKKAVELLRISETTREQLKKIEREEHQEPINFTQK 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,558,354
Number of Sequences: 59808
Number of extensions: 413966
Number of successful extensions: 1110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)