Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0003
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81080-4|CAB03087.2|  224|Caenorhabditis elegans Hypothetical pr...    33   0.34 
Z66515-10|CAI70410.1|  510|Caenorhabditis elegans Hypothetical p...    29   5.6  
Z66515-9|CAA91346.1|  519|Caenorhabditis elegans Hypothetical pr...    29   5.6  
X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.        28   7.4  
U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of l...    28   7.4  
U58730-4|AAK84547.1|  565|Caenorhabditis elegans Suppressor of l...    28   7.4  
U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of l...    28   7.4  
U64840-6|AAB04964.1|  574|Caenorhabditis elegans Hypothetical pr...    28   9.7  
U53141-5|AAA96107.1|  574|Caenorhabditis elegans Hypothetical pr...    28   9.7  

>Z81080-4|CAB03087.2|  224|Caenorhabditis elegans Hypothetical
           protein F39H2.4 protein.
          Length = 224

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = +1

Query: 52  DNLVKSDYGLSKENFNYFLNALKNDLDTLAERIKEKSEKAGQEISTISQ 198
           ++L+KS   LS ++ N   N+LKN+LD L    K+       + STIS+
Sbjct: 126 NSLIKSMNNLSHDSMNGQFNSLKNNLDELNIEKKQLEVAIADQSSTISE 174


>Z66515-10|CAI70410.1|  510|Caenorhabditis elegans Hypothetical
           protein R53.1b protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 26/72 (36%), Positives = 31/72 (43%)
 Frame = +3

Query: 273 DDKTLKELSHAFNXIVQFFAKIFDTIYKGTEPIVEXXINTYVETVKKIAEXYXXQLEPQV 452
           DDKT   L+HAF   +QF  +I           V   + TY  T KK AE     LE  V
Sbjct: 78  DDKTYLGLAHAFTDQMQFSDEI--------RQAVNRFLPTY--TAKKRAEGVGEGLEEAV 127

Query: 453 RQLYETLAALLK 488
           R   E L  + K
Sbjct: 128 RLATEKLCTIPK 139


>Z66515-9|CAA91346.1|  519|Caenorhabditis elegans Hypothetical
           protein R53.1a protein.
          Length = 519

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 26/72 (36%), Positives = 31/72 (43%)
 Frame = +3

Query: 273 DDKTLKELSHAFNXIVQFFAKIFDTIYKGTEPIVEXXINTYVETVKKIAEXYXXQLEPQV 452
           DDKT   L+HAF   +QF  +I           V   + TY  T KK AE     LE  V
Sbjct: 87  DDKTYLGLAHAFTDQMQFSDEI--------RQAVNRFLPTY--TAKKRAEGVGEGLEEAV 136

Query: 453 RQLYETLAALLK 488
           R   E L  + K
Sbjct: 137 RLATEKLCTIPK 148


>X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.
          Length = 582

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 107 KK*LKFSLDSP*SLLTRLSCRKSAXWAMFFXSPD 6
           KK L+     P S + RLSC +   WA+ + +PD
Sbjct: 287 KKRLEKLTKKPGSYIFRLSCTRPGQWAIGYVAPD 320


>U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform a protein.
          Length = 582

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 107 KK*LKFSLDSP*SLLTRLSCRKSAXWAMFFXSPD 6
           KK L+     P S + RLSC +   WA+ + +PD
Sbjct: 287 KKRLEKLTKKPGSYIFRLSCTRPGQWAIGYVAPD 320


>U58730-4|AAK84547.1|  565|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform b protein.
          Length = 565

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 107 KK*LKFSLDSP*SLLTRLSCRKSAXWAMFFXSPD 6
           KK L+     P S + RLSC +   WA+ + +PD
Sbjct: 270 KKRLEKLTKKPGSYIFRLSCTRPGQWAIGYVAPD 303


>U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform c protein.
          Length = 523

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 107 KK*LKFSLDSP*SLLTRLSCRKSAXWAMFFXSPD 6
           KK L+     P S + RLSC +   WA+ + +PD
Sbjct: 270 KKRLEKLTKKPGSYIFRLSCTRPGQWAIGYVAPD 303


>U64840-6|AAB04964.1|  574|Caenorhabditis elegans Hypothetical
           protein ZC317.7 protein.
          Length = 574

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 139 AERIKEKSEKAGQEISTISQKTAPYFKKIDEDFRREWSNFTRKSLMIRL 285
           A++ K K+EK  ++  T   K     +KI     R++SNF++   +IRL
Sbjct: 278 AQKAKLKAEKLAEKTKTTVVKKKK--EKISGQSNRKFSNFSKDMFVIRL 324


>U53141-5|AAA96107.1|  574|Caenorhabditis elegans Hypothetical
           protein C14C11.2 protein.
          Length = 574

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 139 AERIKEKSEKAGQEISTISQKTAPYFKKIDEDFRREWSNFTRKSLMIRL 285
           A++ K K+EK  ++  T   K     +KI     R++SNF++   +IRL
Sbjct: 278 AQKAKLKAEKLAEKAKTAVVKKKK--EKISGQSNRKFSNFSKDMFVIRL 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,063,129
Number of Sequences: 27780
Number of extensions: 321898
Number of successful extensions: 930
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)