Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0003
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              25   1.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   8.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   8.3  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 333 KIFDTIYKGTEPIVEXXINTYVETVKK 413
           KI D +Y G   + +  + +YVE + K
Sbjct: 42  KIIDEVYNGNVNVEDENVQSYVECMMK 68


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 428 IXFRNLFHCLDVRVNXXLHNRLSTFV 351
           +  +N+F  L V +N  LH ++  FV
Sbjct: 2   LNMKNIFPVLFVIINVLLHGQVICFV 27


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 754 PEKFQMLTQXWYQQLSXNCLPN 819
           PE+F+++   W +    N +PN
Sbjct: 333 PEQFKVIIDNWIKGTPQNNVPN 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,724
Number of Sequences: 438
Number of extensions: 3840
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)