Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0002
(847 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 87 2e-17
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 84 2e-16
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 82 6e-16
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 79 6e-15
05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653... 59 5e-09
03_06_0198 - 32299480-32299643,32300084-32300126,32300843-323009... 35 0.071
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067 31 0.87
03_05_1084 - 30252933-30253019,30253107-30253226,30253498-302535... 29 6.2
10_06_0127 - 11027692-11027826,11027925-11027993,11029925-110300... 28 8.1
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 87.0 bits (206), Expect = 2e-17
Identities = 47/118 (39%), Positives = 72/118 (61%), Gaps = 6/118 (5%)
Frame = +1
Query: 280 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFG-KISEENIKNN 456
PV I SF +++ +N+++ V N N A F+F+++ + + +SYFG E+ I+NN
Sbjct: 49 PVRQIGGCSFLYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNN 108
Query: 457 FVLIYELLDEILDFGYPRILILGS*RHSSLQQGIKS--ASKEEQAQI---TSQVTGQI 615
FVLIYELLDEI+DFGYP+ L + Q+G++S +SK + T QVTG +
Sbjct: 109 FVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAV 166
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/38 (47%), Positives = 28/38 (73%)
Frame = +2
Query: 140 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNV 253
P ++ N +G+VLI+R+YRDD+G N VDAFR+++
Sbjct: 2 PVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHI 39
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/78 (23%), Positives = 37/78 (47%)
Frame = +2
Query: 557 SSLPPRRNKPRLPHK*LVRLXWRREGIKYRRNELFP*CTXVCQLXDVTARSKCSLXHVGW 736
SS P + P + + WRREG+ Y++NE+F + + ++ SK S+
Sbjct: 147 SSKPSDKPVPNATLQVTGAVGWRREGLMYKKNEVF---LDIVESVNLLMSSKGSVLRCDV 203
Query: 737 EKWVMKVIIVPGLPECQV 790
++ + G+P+ ++
Sbjct: 204 TGKILMKCFLSGMPDLKL 221
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 83.8 bits (198), Expect = 2e-16
Identities = 36/82 (43%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
Frame = +1
Query: 268 QVRSPVTNI-ARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEEN 444
+V SPV + A S+ I+ N++L ++QN NAA + FL +++DV + YF ++ EE+
Sbjct: 48 EVLSPVVHDDAGVSYMFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEES 107
Query: 445 IKNNFVLIYELLDEILDFGYPR 510
+++NFV++YELLDE++DFGYP+
Sbjct: 108 LRDNFVVVYELLDEMMDFGYPQ 129
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 81.8 bits (193), Expect = 6e-16
Identities = 34/82 (41%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +1
Query: 268 QVRSPVT-NIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEEN 444
+ SPV + A ++ I+ N++L ++QN NAA + FL +++DV + YF ++ EE+
Sbjct: 47 EAHSPVVYDDAGVTYMFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEES 106
Query: 445 IKNNFVLIYELLDEILDFGYPR 510
+++NFV++YELLDE++DFGYP+
Sbjct: 107 LRDNFVVVYELLDEMMDFGYPQ 128
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 620 WRREGIKYRRNELFP*CTXVCQLXDVTARSKCSLXHVGWEKWVMKVIIVPGLPECQV 790
WR EGI+Y++NE+F V + ++ S + + + G+PEC++
Sbjct: 162 WRSEGIRYKKNEVF---LDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKL 215
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 78.6 bits (185), Expect = 6e-15
Identities = 30/77 (38%), Positives = 53/77 (68%)
Frame = +1
Query: 280 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNF 459
PV N+ ++ H+K A ++ T NV+ +++ E L +I V + Y G ++E++++ NF
Sbjct: 49 PVFNVDGVNYIHVKVAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLGVLNEDSLRKNF 108
Query: 460 VLIYELLDEILDFGYPR 510
+L+YELLDE++DFGYP+
Sbjct: 109 ILVYELLDEVIDFGYPQ 125
>05_04_0141 -
18364065-18364176,18364722-18364948,18365183-18365390,
18365497-18365706,18366078-18366180,18366214-18366325,
18367061-18367204,18367835-18367936,18368081-18368186,
18368301-18368335
Length = 452
Score = 58.8 bits (136), Expect = 5e-09
Identities = 23/50 (46%), Positives = 38/50 (76%)
Frame = +1
Query: 358 NVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYP 507
+VN F+FL ++ DV+ Y G ++E+ IK+NFVL+Y++LDE++D G+P
Sbjct: 91 SVNMICDFQFLSRVADVLTDYLGDLNEDIIKDNFVLVYQILDEMMDNGFP 140
>03_06_0198 -
32299480-32299643,32300084-32300126,32300843-32300929,
32301063-32301098,32301187-32301295,32301408-32301499,
32302029-32302115,32303887-32304222
Length = 317
Score = 35.1 bits (77), Expect = 0.071
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 325 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFG 501
A+++ N V E + ++V+ YFG + E ++ NF Y +LDEIL G
Sbjct: 174 ASLYFCMCIDAEDNELEVLEIIHHFVEVLDRYFGSVCELDLIFNFHKAYYILDEILIAG 232
>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
Length = 1064
Score = 31.5 bits (68), Expect = 0.87
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 268 AGEHGHIHSE-CVHSITTNIISVDSRDQHLAFMVVNEQAS 152
+GEHGH H + SI T ++++D D H A V E+ S
Sbjct: 943 SGEHGHSHHRLLLESIATRVVTLDG-DHHGAAAAVRERLS 981
>03_05_1084 -
30252933-30253019,30253107-30253226,30253498-30253527,
30253608-30253652,30253807-30253851,30253927-30254154,
30254599-30254673,30255426-30255547,30256429-30256543,
30257493-30257750
Length = 374
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -2
Query: 537 MSSGPQYQNSRVTKVQDLIKQLIDQNKVILDV-LFRNLA 424
+ SG N+RV KV+D ++QL+D + + D+ L R LA
Sbjct: 177 LKSGMTRLNARVQKVRDELEQLLDDDDDMADLYLSRKLA 215
>10_06_0127 -
11027692-11027826,11027925-11027993,11029925-11030011,
11030146-11030286
Length = 143
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/56 (19%), Positives = 30/56 (53%)
Frame = +1
Query: 325 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 492
A+++ + N + EF+ +++ M +FG + E +I + ++ +L+E++
Sbjct: 64 ASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMV 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,235,034
Number of Sequences: 37544
Number of extensions: 478289
Number of successful extensions: 1079
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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