Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0002
(847 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44) 181 7e-46
SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20) 72 5e-13
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0) 31 1.2
SB_59294| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.20004e-41) 31 1.2
SB_41497| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_26838| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0) 28 8.3
SB_24482| Best HMM Match : KID (HMM E-Value=0.045) 28 8.3
>SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)
Length = 331
Score = 181 bits (440), Expect = 7e-46
Identities = 83/120 (69%), Positives = 101/120 (84%)
Frame = +1
Query: 256 HARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKIS 435
HAR Q+RSPVTNIARTSFFHI++ N+W+AAVT+QNVNAAMVFEFL + +D+M SYFGK++
Sbjct: 38 HARGQIRSPVTNIARTSFFHIRQGNVWIAAVTRQNVNAAMVFEFLFRTVDIMMSYFGKVT 97
Query: 436 EENIKNNFVLIYELLDEILDFGYPRILILGS*RHSSLQQGIKSASKEEQAQITSQVTGQI 615
EE IKNNFVLIYELLDEI D+GYP+ + QQG+K+ ++EEQAQITSQVTGQI
Sbjct: 98 EEGIKNNFVLIYELLDEIADYGYPQKTDTAILKTFITQQGVKTQTREEQAQITSQVTGQI 157
Score = 74.9 bits (176), Expect = 7e-14
Identities = 33/36 (91%), Positives = 34/36 (94%)
Frame = +2
Query: 146 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNV 253
MIGG F+YNHKGEVLISRVYRDDIGRN VDAFRVNV
Sbjct: 1 MIGGFFIYNHKGEVLISRVYRDDIGRNTVDAFRVNV 36
Score = 37.9 bits (84), Expect = 0.010
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +2
Query: 611 RLXWRREGIKYRRNELFP*CTXVCQLXDVTARSKCSLXHVGWEKWVMKVIIVPGLPECQ 787
++ WRR+GIKYRRNELF L ++ + + HV + VMK + G+PEC+
Sbjct: 156 QIGWRRDGIKYRRNELFLDVLESVNLL-MSPQGQVLSAHVS-GRVVMKSFL-SGMPECK 211
>SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)
Length = 216
Score = 72.1 bits (169), Expect = 5e-13
Identities = 28/58 (48%), Positives = 45/58 (77%)
Frame = +1
Query: 337 LAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPR 510
+ TK+N N A++F FL +++ V YF ++ EE+I++NFV+IYEL+DE++DFGYP+
Sbjct: 12 VVCTTKKNANVALIFVFLHRMVHVFIDYFKELEEESIRDNFVIIYELMDELVDFGYPQ 69
>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = +1
Query: 397 IIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 504
+ ++ + Y G I+EE IK N LIYELLDE+LDFGY
Sbjct: 18 VCNLCKDYCGIINEEAIKCNLPLIYELLDEVLDFGY 53
>SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 712
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +1
Query: 346 VTKQNVNAAMVFEFLLKIIDVMQSY--FGKISE-ENIKNNFVLIYELLDEILDFGYPRIL 516
VT + N V F+L++I + S+ G +S+ +NI + FV++ + + +L+ GY R+
Sbjct: 227 VTLEKTNIVFVTIFVLEMIINVISFGIMGYLSQLQNIFDGFVVVLSVTELLLENGYARLS 286
Query: 517 ILGS*R 534
+ S R
Sbjct: 287 VFRSIR 292
>SB_59294| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.20004e-41)
Length = 851
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -2
Query: 522 QYQNSRVTKVQDLIKQLIDQNKVILDVLFRN 430
Q++N+ V + QDLIKQL ++ ++ L V F N
Sbjct: 135 QHENTEVLRCQDLIKQLAEKYELPLKVGFNN 165
>SB_41497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 792
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -2
Query: 429 LAKIRLHHINDLQQEL-KYHGRVHILLCDCCQ 337
+A+I+ + I D Q++ KY G H+L+ DCC+
Sbjct: 732 IARIKRYAIQDRQKDRPKYTGFHHMLMYDCCR 763
>SB_26838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -2
Query: 429 LAKIRLHHINDLQQEL-KYHGRVHILLCDCCQ 337
+A+I+ + I D Q++ KY G H+L+ DCC+
Sbjct: 280 IARIKRYAIQDRQKDRPKYTGFHHMLMYDCCR 311
>SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1457
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Frame = +1
Query: 346 VTKQNVNAAMVFEFLLKIIDVMQSY--FGKISE-ENIKNNFVLIYELLDEILDFGYPRIL 516
VT + N V F+L++I + S+ G +S+ +NI + FV+ + + +L+ GY R+
Sbjct: 484 VTLEKTNIVFVTIFVLEMIINVISFGIMGYLSQLQNIFDGFVVGLSVTELLLENGYARLS 543
Query: 517 ILGS*R 534
+ S R
Sbjct: 544 VFRSIR 549
>SB_24482| Best HMM Match : KID (HMM E-Value=0.045)
Length = 1714
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/34 (44%), Positives = 26/34 (76%), Gaps = 2/34 (5%)
Frame = -2
Query: 513 NSRVTKVQDLIKQLIDQNKVI-LDVL-FRNLAKI 418
NS++ +V++ +K +ID+NKV ++VL R LAK+
Sbjct: 1307 NSQLMEVRNKLKGVIDENKVFRMEVLRLRQLAKV 1340
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,615,068
Number of Sequences: 59808
Number of extensions: 552168
Number of successful extensions: 2033
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2026
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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