Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0002
(847 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 190 1e-48
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 181 5e-46
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 179 3e-45
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 86 3e-17
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 86 3e-17
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 80 2e-15
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 60 2e-09
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 40 0.003
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 30 2.4
AC024777-3|AAF60562.3| 563|Caenorhabditis elegans Hypothetical ... 28 7.3
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 28 9.6
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 190 bits (462), Expect = 1e-48
Identities = 88/120 (73%), Positives = 104/120 (86%)
Frame = +1
Query: 256 HARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKIS 435
HARQQVRSPVTN+ARTSFFH+KR N+W+ AVT+QNVNAAMVFEFL + D MQSYFGK++
Sbjct: 38 HARQQVRSPVTNMARTSFFHVKRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLN 97
Query: 436 EENIKNNFVLIYELLDEILDFGYPRILILGS*RHSSLQQGIKSASKEEQAQITSQVTGQI 615
EEN+KNNFVLIYELLDEILDFGYP+ G + QQG+++A+KEEQ+QITSQVTGQI
Sbjct: 98 EENVKNNFVLIYELLDEILDFGYPQNTDPGVLKTFITQQGVRTATKEEQSQITSQVTGQI 157
Score = 74.5 bits (175), Expect = 8e-14
Identities = 33/36 (91%), Positives = 35/36 (97%)
Frame = +2
Query: 146 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNV 253
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNV
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNV 36
Score = 38.3 bits (85), Expect = 0.007
Identities = 24/59 (40%), Positives = 32/59 (54%)
Frame = +2
Query: 611 RLXWRREGIKYRRNELFP*CTXVCQLXDVTARSKCSLXHVGWEKWVMKVIIVPGLPECQ 787
++ WRREGIKYRRNELF L + + + HV K MK + G+PEC+
Sbjct: 156 QIGWRREGIKYRRNELFLDVIEYVNLL-MNQQGQVLSAHVA-GKVAMKSYL-SGMPECK 211
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 181 bits (441), Expect = 5e-46
Identities = 88/126 (69%), Positives = 104/126 (82%), Gaps = 6/126 (4%)
Frame = +1
Query: 256 HARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKIS 435
HARQQVRSPVTN+ARTSFFH+KR N+W+ AVT+QNVNAAMVFEFL + D MQSYFGK++
Sbjct: 38 HARQQVRSPVTNMARTSFFHVKRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLN 97
Query: 436 EENIKNNFVLIYELLDEILDFGYPRILILGS*RHSSLQQGIKSA------SKEEQAQITS 597
EEN+KNNFVLIYELLDEILDFGYP+ G + QQG+++A +KEEQ+QITS
Sbjct: 98 EENVKNNFVLIYELLDEILDFGYPQNTDPGVLKTFITQQGVRTADAPVPVTKEEQSQITS 157
Query: 598 QVTGQI 615
QVTGQI
Sbjct: 158 QVTGQI 163
Score = 74.5 bits (175), Expect = 8e-14
Identities = 33/36 (91%), Positives = 35/36 (97%)
Frame = +2
Query: 146 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNV 253
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNV
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNV 36
Score = 38.3 bits (85), Expect = 0.007
Identities = 24/59 (40%), Positives = 32/59 (54%)
Frame = +2
Query: 611 RLXWRREGIKYRRNELFP*CTXVCQLXDVTARSKCSLXHVGWEKWVMKVIIVPGLPECQ 787
++ WRREGIKYRRNELF L + + + HV K MK + G+PEC+
Sbjct: 162 QIGWRREGIKYRRNELFLDVIEYVNLL-MNQQGQVLSAHVA-GKVAMKSYL-SGMPECK 217
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 179 bits (435), Expect = 3e-45
Identities = 87/126 (69%), Positives = 103/126 (81%), Gaps = 6/126 (4%)
Frame = +1
Query: 256 HARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKIS 435
HARQQVRSPVTN+ARTSFFH+KR N+W+ AVT+QNVNAAMVF FL + D MQSYFGK++
Sbjct: 38 HARQQVRSPVTNMARTSFFHVKRGNVWICAVTRQNVNAAMVFAFLKRFADTMQSYFGKLN 97
Query: 436 EENIKNNFVLIYELLDEILDFGYPRILILGS*RHSSLQQGIKSA------SKEEQAQITS 597
EEN+KNNFVLIYELLDEILDFGYP+ G + QQG+++A +KEEQ+QITS
Sbjct: 98 EENVKNNFVLIYELLDEILDFGYPQNTDPGVLKTFITQQGVRTADAPVPVTKEEQSQITS 157
Query: 598 QVTGQI 615
QVTGQI
Sbjct: 158 QVTGQI 163
Score = 74.5 bits (175), Expect = 8e-14
Identities = 33/36 (91%), Positives = 35/36 (97%)
Frame = +2
Query: 146 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNV 253
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNV
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNV 36
Score = 38.3 bits (85), Expect = 0.007
Identities = 24/59 (40%), Positives = 32/59 (54%)
Frame = +2
Query: 611 RLXWRREGIKYRRNELFP*CTXVCQLXDVTARSKCSLXHVGWEKWVMKVIIVPGLPECQ 787
++ WRREGIKYRRNELF L + + + HV K MK + G+PEC+
Sbjct: 162 QIGWRREGIKYRRNELFLDVIEYVNLL-MNQQGQVLSAHVA-GKVAMKSYL-SGMPECK 217
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 86.2 bits (204), Expect = 3e-17
Identities = 35/78 (44%), Positives = 53/78 (67%)
Frame = +1
Query: 277 SPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNN 456
+PV T+F IK NI+L + + NVN M+ FL K ++V YF + EE++++N
Sbjct: 47 APVLTYQDTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDN 106
Query: 457 FVLIYELLDEILDFGYPR 510
FV+IYELLDE++DFG+P+
Sbjct: 107 FVVIYELLDEMMDFGFPQ 124
Score = 33.1 bits (72), Expect = 0.26
Identities = 23/84 (27%), Positives = 40/84 (47%)
Frame = +2
Query: 584 PRLPHK*LVRLXWRREGIKYRRNELFP*CTXVCQLXDVTARSKCSLXHVGWEKWVMKVII 763
PR P + WR EGIKYR+NE+F V + ++ A + ++ V +
Sbjct: 146 PRPPMAVTNAVSWRSEGIKYRKNEVF---LDVIESVNMLASANGTVLQSEIVGSVKMRVY 202
Query: 764 VPGLPECQVWXSMVXIRFGKPKGK 835
+ G+PE ++ + + G +GK
Sbjct: 203 LTGMPELRLGLNDKVLFEGSGRGK 226
Score = 31.9 bits (69), Expect = 0.59
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 158 LFVYNHKGEVLISRVYRDDIGRNAVDAF 241
+F+ + KG+ +ISR YR DI A+D F
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF 33
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 86.2 bits (204), Expect = 3e-17
Identities = 35/78 (44%), Positives = 53/78 (67%)
Frame = +1
Query: 277 SPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNN 456
+PV T+F IK NI+L + + NVN M+ FL K ++V YF + EE++++N
Sbjct: 47 APVLTYQDTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDN 106
Query: 457 FVLIYELLDEILDFGYPR 510
FV+IYELLDE++DFG+P+
Sbjct: 107 FVVIYELLDEMMDFGFPQ 124
Score = 33.1 bits (72), Expect = 0.26
Identities = 23/84 (27%), Positives = 40/84 (47%)
Frame = +2
Query: 584 PRLPHK*LVRLXWRREGIKYRRNELFP*CTXVCQLXDVTARSKCSLXHVGWEKWVMKVII 763
PR P + WR EGIKYR+NE+F V + ++ A + ++ V +
Sbjct: 146 PRPPMAVTNAVSWRSEGIKYRKNEVF---LDVIESVNMLASANGTVLQSEIVGSVKMRVY 202
Query: 764 VPGLPECQVWXSMVXIRFGKPKGK 835
+ G+PE ++ + + G +GK
Sbjct: 203 LTGMPELRLGLNDKVLFEGSGRGK 226
Score = 31.9 bits (69), Expect = 0.59
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 158 LFVYNHKGEVLISRVYRDDIGRNAVDAF 241
+F+ + KG+ +ISR YR DI A+D F
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF 33
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 80.2 bits (189), Expect = 2e-15
Identities = 40/110 (36%), Positives = 63/110 (57%)
Frame = +1
Query: 277 SPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNN 456
SPV S+ +IK N++L ++K+N N +V L KI++V YF + EE +++N
Sbjct: 47 SPVLVHQGISYTYIKYMNVYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDN 106
Query: 457 FVLIYELLDEILDFGYPRILILGS*RHSSLQQGIKSASKEEQAQITSQVT 606
FV+IYEL DE+LDFGYP+ + QQG + + +T+ V+
Sbjct: 107 FVIIYELFDEMLDFGYPQTTESKILQEFITQQGNRLETVRPPMAVTNAVS 156
Score = 34.3 bits (75), Expect = 0.11
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 149 IGGLFVYNHKGEVLISRVYRDDIGRNAVDAF 241
I GLF+ + KG V+ISR YR D+ + ++ F
Sbjct: 3 ISGLFILDLKGNVVISRNYRGDVDMSCIEKF 33
Score = 31.1 bits (67), Expect = 1.0
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 620 WRREGIKYRRNELF 661
WR EGIKYR+NE+F
Sbjct: 157 WRSEGIKYRKNEVF 170
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 60.1 bits (139), Expect = 2e-09
Identities = 36/115 (31%), Positives = 61/115 (53%)
Frame = +1
Query: 280 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNF 459
P+ + ++ + N++L AV MV EFL ++I YF + S+ ++K N
Sbjct: 47 PIISTPHHYLINVYQNNLFLVAVITVETPPLMVIEFLHRVIQTFTQYFDEFSDSSMKENC 106
Query: 460 VLIYELLDEILDFGYPRILILGS*RHSSLQQGIKSASKEEQAQITSQVTGQIXLA 624
V+++ELLDE+LD G+P + + + LQ IK + I +QVTG+ L+
Sbjct: 107 VMVFELLDEMLDNGFPLVTEM-----NILQDLIKPPN--FLRNIANQVTGRTNLS 154
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 590 LPHK*LVRLXWRREGIKYRRNELF 661
LP L + WRR+G+KY NE +
Sbjct: 157 LPTGQLSNIPWRRQGVKYTNNEAY 180
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 325 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 492
A+++ +QN N + E + + ++++ YFG + E +I NF Y +LDE L
Sbjct: 63 ASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFL 118
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 328 NIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI-KNNFVLIYELLDEILDFGY 504
NI+L VT +N N E L + V+ Y E+ I ++F LI+ DE++ GY
Sbjct: 69 NIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIF-AFDEVVTLGY 127
>AC024777-3|AAF60562.3| 563|Caenorhabditis elegans Hypothetical
protein Y42H9AR.3 protein.
Length = 563
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 221 RNAVDAFRVNVTMLA-SRCDHLLPTLHAHLSSISSVQIFGWQQS 349
R A D RVN T++ S L H+HL+S SSV FG S
Sbjct: 446 RRAKDFARVNRTVMKMSSSMPQLQEQHSHLNSTSSVSSFGGPSS 489
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +1
Query: 364 NAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEI 489
N E + ++V+ YF + E ++ NF +Y ++DE+
Sbjct: 76 NNLYYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEM 117
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,653,871
Number of Sequences: 27780
Number of extensions: 411889
Number of successful extensions: 1103
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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