Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0002
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   4.7  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   6.2  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   6.2  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   6.2  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   6.2  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   6.2  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   6.2  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   6.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.2  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 792 QTWHSGNPGTIMTFMTHFSQPT*XREHLD 706
           + W S   G I  F+T F+ P   + H+D
Sbjct: 307 RAWESIIVGMIGAFITCFTMPLLDKMHID 335


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 281 GDRTCWRAWSHSL*MRPQHYDQYH 210
           G+R+C R  S     + + YDQ H
Sbjct: 249 GERSCSRDRSREYKKKDRRYDQLH 272


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 281 GDRTCWRAWSHSL*MRPQHYDQYH 210
           G+R+C R  S     + + YDQ H
Sbjct: 249 GERSCSRDRSREYKKKDRRYDQLH 272


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 281 GDRTCWRAWSHSL*MRPQHYDQYH 210
           G+R+C R  S     + + YDQ H
Sbjct: 249 GERSCSRDRSREYKKKDRRYDQLH 272


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 281 GDRTCWRAWSHSL*MRPQHYDQYH 210
           G+R+C R  S     + + YDQ H
Sbjct: 249 GERSCSRDRSREYKKKDRRYDQLH 272


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 281 GDRTCWRAWSHSL*MRPQHYDQYH 210
           G+R+C R  S     + + YDQ H
Sbjct: 249 GERSCSRDRSREYKKKDRRYDQLH 272


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 281 GDRTCWRAWSHSL*MRPQHYDQYH 210
           G+R+C R  S     + + YDQ H
Sbjct: 249 GERSCSRDRSREYKKKDRRYDQLH 272


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 281 GDRTCWRAWSHSL*MRPQHYDQYH 210
           G+R+C R  S     + + YDQ H
Sbjct: 249 GERSCSRDRSREYKKKDRRYDQLH 272


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = -2

Query: 354 LCDCCQPNICTLDMEERCACNVGN 283
           LC CC  + C  +M     C   N
Sbjct: 746 LCHCCDFDACDCEMTCPAGCKCYN 769


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 787 LALWQPRDNYDLHDPLFPAHVXQR 716
           +AL+  + +YD  +P +  HV ++
Sbjct: 406 MALYYLKPSYDAQEPAWKTHVWKK 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,762
Number of Sequences: 438
Number of extensions: 5071
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)