Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0002
(847 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46630.2 68418.m05740 clathrin adaptor complexes medium subun... 86 3e-17
At5g46630.1 68418.m05741 clathrin adaptor complexes medium subun... 86 3e-17
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun... 82 5e-16
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun... 81 7e-16
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun... 81 1e-15
At4g24550.1 68417.m03518 clathrin adaptor complexes medium subun... 81 1e-15
At1g56590.1 68414.m06508 clathrin adaptor complexes medium subun... 64 1e-10
At4g35410.2 68417.m05030 clathrin adaptor complex small chain fa... 36 0.034
At2g17380.1 68415.m02007 clathrin assembly protein AP19 identica... 34 0.14
At4g20060.1 68417.m02935 expressed protein ; expression support... 29 2.9
At2g23050.1 68415.m02748 phototropic-responsive NPH3 family prot... 28 6.8
At5g01270.1 68418.m00036 double-stranded RNA-binding domain (DsR... 28 9.0
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 28 9.0
>At5g46630.2 68418.m05740 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 441
Score = 85.8 bits (203), Expect = 3e-17
Identities = 47/118 (39%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
Frame = +1
Query: 280 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFG-KISEENIKNN 456
PV I SF +++ +N+++ V N N A F+F+++ + + +SYFG E+ I+NN
Sbjct: 49 PVRQIGGCSFVYMRISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFGGAFDEDAIRNN 108
Query: 457 FVLIYELLDEILDFGYPRILILGS*RHSSLQQGIKS--ASKEEQAQI---TSQVTGQI 615
FVLIYELLDEI+DFGYP+ L + Q+G++S +SK + + T QVTG +
Sbjct: 109 FVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPKDKPVPNATLQVTGAV 166
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +2
Query: 140 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNV 253
P ++ N +G+VLI+R YRDD+G N VDAFR ++
Sbjct: 2 PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHI 39
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 557 SSLPPRRNKPRLPHK*LVRLXWRREGIKYRRNELF 661
SS P + P + + WRREG+ Y++NE+F
Sbjct: 147 SSKPKDKPVPNATLQVTGAVGWRREGLAYKKNEVF 181
>At5g46630.1 68418.m05741 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 438
Score = 85.8 bits (203), Expect = 3e-17
Identities = 47/118 (39%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
Frame = +1
Query: 280 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFG-KISEENIKNN 456
PV I SF +++ +N+++ V N N A F+F+++ + + +SYFG E+ I+NN
Sbjct: 49 PVRQIGGCSFVYMRISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFGGAFDEDAIRNN 108
Query: 457 FVLIYELLDEILDFGYPRILILGS*RHSSLQQGIKS--ASKEEQAQI---TSQVTGQI 615
FVLIYELLDEI+DFGYP+ L + Q+G++S +SK + + T QVTG +
Sbjct: 109 FVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPKDKPVPNATLQVTGAV 166
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +2
Query: 140 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNV 253
P ++ N +G+VLI+R YRDD+G N VDAFR ++
Sbjct: 2 PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHI 39
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 557 SSLPPRRNKPRLPHK*LVRLXWRREGIKYRRNELF 661
SS P + P + + WRREG+ Y++NE+F
Sbjct: 147 SSKPKDKPVPNATLQVTGAVGWRREGLAYKKNEVF 181
>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 81.8 bits (193), Expect = 5e-16
Identities = 33/81 (40%), Positives = 57/81 (70%)
Frame = +1
Query: 268 QVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI 447
Q PV ++ ++ +NI+L ++QN NAA + FL +++DV + YF ++ EE++
Sbjct: 47 QSNDPVAYDNGVTYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESL 106
Query: 448 KNNFVLIYELLDEILDFGYPR 510
++NFV++YELLDE++DFGYP+
Sbjct: 107 RDNFVVVYELLDEMMDFGYPQ 127
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +2
Query: 620 WRREGIKYRRNELFP*CTXVCQLXDVTARSKCSLXHVGWEKWVMKVIIVPGLPECQV 790
WR EG+K+++NE+F V + ++ S + + + G+PEC++
Sbjct: 161 WRSEGLKFKKNEVF---LDVIESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKL 214
>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 81.4 bits (192), Expect = 7e-16
Identities = 32/81 (39%), Positives = 57/81 (70%)
Frame = +1
Query: 268 QVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI 447
Q PV ++ ++ +N++L ++QN NAA + FL +++DV + YF ++ EE++
Sbjct: 47 QSNDPVAYDNGVTYMFVQHSNVYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESL 106
Query: 448 KNNFVLIYELLDEILDFGYPR 510
++NFV++YELLDE++DFGYP+
Sbjct: 107 RDNFVVVYELLDEMMDFGYPQ 127
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 620 WRREGIKYRRNELFP*CTXVCQLXDVTARSKCSLXHVGWEKWVMKVIIVPGLPECQV 790
WR EGI+Y++NE+F V + ++ S + + + G+PEC++
Sbjct: 161 WRSEGIQYKKNEVF---LDVIENVNILVNSNGQIVRSDVVGALKMRTYLTGMPECKL 214
>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 451
Score = 80.6 bits (190), Expect = 1e-15
Identities = 31/75 (41%), Positives = 53/75 (70%)
Frame = +1
Query: 280 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNF 459
P+ N+ ++FH+K ++ A T+ NV+ ++V E L +I V++ Y G ++E++ + NF
Sbjct: 50 PIFNVDGVNYFHVKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNF 109
Query: 460 VLIYELLDEILDFGY 504
VL+YELLDE++DFGY
Sbjct: 110 VLVYELLDEVIDFGY 124
>At4g24550.1 68417.m03518 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 380
Score = 80.6 bits (190), Expect = 1e-15
Identities = 31/75 (41%), Positives = 53/75 (70%)
Frame = +1
Query: 280 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNF 459
P+ N+ ++FH+K ++ A T+ NV+ ++V E L +I V++ Y G ++E++ + NF
Sbjct: 50 PIFNVDGVNYFHVKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNF 109
Query: 460 VLIYELLDEILDFGY 504
VL+YELLDE++DFGY
Sbjct: 110 VLVYELLDEVIDFGY 124
>At1g56590.1 68414.m06508 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 415
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/66 (40%), Positives = 43/66 (65%)
Frame = +1
Query: 310 FHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEI 489
F I R I A ++ + M EFL ++ DV+ Y G ++E+ IK+NF+++YELLDE+
Sbjct: 58 FQIVRDGITFLACSQVEMPPLMAIEFLCRVADVLSEYLGGLNEDLIKDNFIIVYELLDEM 117
Query: 490 LDFGYP 507
+D G+P
Sbjct: 118 IDNGFP 123
>At4g35410.2 68417.m05030 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 162
Score = 35.9 bits (79), Expect = 0.034
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +1
Query: 325 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFG 501
A+++ Q N V E + ++++ YFG + E ++ NF Y +LDE+L G
Sbjct: 63 ASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121
>At2g17380.1 68415.m02007 clathrin assembly protein AP19 identical
to clathrin assembly protein AP19 GI:2231698 from
[Arabidopsis thaliana]
Length = 161
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 325 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFG 501
A+++ + N V E + ++++ YFG + E ++ NF Y +LDE+L G
Sbjct: 63 ASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121
>At4g20060.1 68417.m02935 expressed protein ; expression supported by
MPSS
Length = 1134
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = -2
Query: 495 VQDLIKQL--IDQNKVI-LDVLFRNLAKIRLHHINDLQQELKYHGRVHILLCDCCQPNIC 325
V+DL+++L +D N L++L + H+ Q L+ G+V +LL C C
Sbjct: 844 VEDLVRRLWKVDPNVCEKLNILVNTNESLNCFHLQSRNQVLRVCGKVKMLLSICRDALSC 903
Query: 324 TLDMEER 304
T ++ +
Sbjct: 904 TYGLQNQ 910
>At2g23050.1 68415.m02748 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 481
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 229 CGRIQSE-CDHARQQVRSPVTNIARTSFFHIKRAN 330
C ++ +E C+HA Q R P+ I + FF RAN
Sbjct: 418 CRKLSAEACEHAVQNERLPMRVIVQVLFFEQIRAN 452
>At5g01270.1 68418.m00036 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 771
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 298 VQCW*QVIAP--AGEHGHIHSECVHSITTNIISVDSRDQHLAFMVVNEQ 158
V+C + AP + E H+H+ C H + T ++ + + HL M E+
Sbjct: 64 VRCKLESSAPVKSQELMHLHAVCFHELKTAVVMLGDEEIHLVAMPSKEK 112
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = -3
Query: 839 PFSPWAXQNGXXPLXPKLGTLATPGQL*PS*PTFPSP 729
P SP G P P T TPG PS PT PSP
Sbjct: 482 PSSPTTPTPGGSP--PSSPTTPTPGGSPPSSPTTPSP 516
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,549,575
Number of Sequences: 28952
Number of extensions: 378400
Number of successful extensions: 880
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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