Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0001
(818 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 173 2e-44
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 101 2e-22
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 101 2e-22
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 95 8e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 67 3e-12
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 65 1e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 53 4e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 42 1e-04
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.085
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.15
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 3.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.2
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 27 3.2
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 26 5.6
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.6
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 7.4
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 25 9.8
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 25 9.8
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 25 9.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 173 bits (422), Expect = 2e-44
Identities = 78/85 (91%), Positives = 81/85 (95%)
Frame = +2
Query: 254 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 433
+RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMT
Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMT 120
Query: 434 QIMFETFNTPAMYVAIQAVLSLYAS 508
QI+FETFN PA YVAIQAVLSLYAS
Sbjct: 121 QIIFETFNAPAFYVAIQAVLSLYAS 145
Score = 124 bits (300), Expect = 1e-29
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +3
Query: 78 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 257
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Score = 83.8 bits (198), Expect = 3e-17
Identities = 44/74 (59%), Positives = 49/74 (66%)
Frame = +1
Query: 511 RTTGIVLDSGDGVSHTVPIYXGYALPHAILRLDLGXXXXXXXXXXXXLNERXYSFTTTPS 690
RTTGIVLDSGDGV+HTVPIY GYALPHAI+RLDL L ER Y+F+TT
Sbjct: 147 RTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLA-GRDLTDYLMKILMERGYTFSTTAE 205
Query: 691 GKSFVDIXEXLXYV 732
+ DI E L YV
Sbjct: 206 REIVRDIKEKLCYV 219
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 101 bits (241), Expect = 2e-22
Identities = 43/80 (53%), Positives = 55/80 (68%)
Frame = +2
Query: 269 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 448
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 449 TFNTPAMYVAIQAVLSLYAS 508
+FN +Y+A+QAVL+L AS
Sbjct: 149 SFNCAGLYIAVQAVLALAAS 168
Score = 42.7 bits (96), Expect = 6e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +3
Query: 96 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 245
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
Score = 39.1 bits (87), Expect = 7e-04
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1
Query: 508 RRTTGIVLDSGDGVSHTVPIYXGYALPHAILRLDL 612
R TG V+DSGDGV+H +P+ GY + +I + L
Sbjct: 177 RSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPL 211
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 101 bits (241), Expect = 2e-22
Identities = 42/83 (50%), Positives = 63/83 (75%)
Frame = +2
Query: 257 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 436
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 437 IMFETFNTPAMYVAIQAVLSLYA 505
MFE + +YVAIQAVLSLYA
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYA 144
Score = 54.4 bits (125), Expect = 2e-08
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Frame = +3
Query: 84 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQS 254
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
Score = 49.6 bits (113), Expect = 5e-07
Identities = 25/73 (34%), Positives = 39/73 (53%)
Frame = +1
Query: 514 TTGIVLDSGDGVSHTVPIYXGYALPHAILRLDLGXXXXXXXXXXXXLNERXYSFTTTPSG 693
++G+V+DSGDGV+H VP+Y L H + RLD+ L + Y+F T
Sbjct: 148 SSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLL-RKGYAFNRTADF 206
Query: 694 KSFVDIXEXLXYV 732
++ ++ E L YV
Sbjct: 207 ETVREMKEKLCYV 219
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 95.5 bits (227), Expect = 8e-21
Identities = 42/85 (49%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMT 433
RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125
Query: 434 QIMFETFNTPAMYVAIQAVLSLYAS 508
+ +ET N PA+ ++Q VL+LYAS
Sbjct: 126 EYFYETLNVPALSFSLQPVLALYAS 150
Score = 69.7 bits (163), Expect = 5e-13
Identities = 30/53 (56%), Positives = 39/53 (73%)
Frame = +3
Query: 96 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 254
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQN 64
Score = 50.8 bits (116), Expect = 2e-07
Identities = 20/35 (57%), Positives = 30/35 (85%)
Frame = +1
Query: 511 RTTGIVLDSGDGVSHTVPIYXGYALPHAILRLDLG 615
RTTGIVL+ GDG++H+VPIY G+++P AI + ++G
Sbjct: 152 RTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIG 186
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 66.9 bits (156), Expect = 3e-12
Identities = 31/81 (38%), Positives = 45/81 (55%)
Frame = +2
Query: 266 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 445
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 446 ETFNTPAMYVAIQAVLSLYAS 508
E+ PA Y+A Q + +AS
Sbjct: 123 ESLRCPATYLAKQETCAAFAS 143
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 81 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 182
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 65.3 bits (152), Expect = 1e-11
Identities = 29/82 (35%), Positives = 47/82 (57%)
Frame = +2
Query: 281 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 460
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 461 PAMYVAIQAVLSLYASVVPPVS 526
P++ I + S Y + P S
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSS 166
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 96 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 191
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 514 TTGIVLDSGDGVSHTVPIYXGYALPHAILRLDLG 615
++GIVL+ G+ SH +P+ G + R+ G
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWG 198
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 53.2 bits (122), Expect = 4e-08
Identities = 22/73 (30%), Positives = 42/73 (57%)
Frame = +2
Query: 290 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 469
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 470 YVAIQAVLSLYAS 508
Y+ QAV +A+
Sbjct: 134 YLTKQAVCVAFAN 146
Score = 38.7 bits (86), Expect = 0.001
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +3
Query: 81 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 251
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +2
Query: 281 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 448
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 449 TFNTPAMYVAIQAVLSLYA 505
P +A + ++ LYA
Sbjct: 172 ECQVPGFTIAYEPLMGLYA 190
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 32.3 bits (70), Expect = 0.085
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 341 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASVV 514
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + + A+ L V
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQHLNIQAV 1458
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.5 bits (68), Expect = 0.15
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = -2
Query: 262 TSLLCASS----PTYESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTT 98
TS C +S PT S P+ PT+ P P N S P PL+TT
Sbjct: 389 TSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATT 448
Query: 97 NAATSSS 77
N TS+S
Sbjct: 449 NCTTSTS 455
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 141 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 254
G+ PRA F ++ P H G+++ M KD G+E S
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMS 537
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 241 SPTYESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 125
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 660 AXLLVHYNAEREIVRGYQXXAVXRWLSTFE 749
A L +HYNA+R GY L TFE
Sbjct: 342 ANLAIHYNAKRISETGYSFDLCFSTLQTFE 371
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 523 IVLDSGDGVSHTVPIYXGYALPHAILRLDLG 615
+V+DSG +H +P+ A+ R+D+G
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVG 189
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 383 LLTEAPLNPKANREKMTQIMFETFN 457
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 135 NRPCTYRSHCLLPTRQLP 82
NRP YRSH + TR+ P
Sbjct: 323 NRPSNYRSHSSMGTRRSP 340
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 239 TYVRVLLSHTDHHALMAGPSDDRGEYGARSIISCETGLAHTG 114
TY +LL D + + G +DR + + + + C L H+G
Sbjct: 226 TYPSLLLEEWDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSG 267
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -3
Query: 294 PCSMGYLRVRIPLCSVPRHLRTSPSVPYRP 205
P + Y PL +VP L PSV Y P
Sbjct: 349 PLQLSYAHYATPLPAVPTVLSGLPSVAYTP 378
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 25.4 bits (53), Expect = 9.8
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = +3
Query: 462 PPCTSPSKPCSRCTRPSYHRYRAGLRRRCL----PHRTHLRXIRTPPRHPASGLGPVAI 626
P SP S +RPSYH+ + + ++ + P LR RT P + P I
Sbjct: 465 PNAISPKAKFSLPSRPSYHKDNSFISKQAIDKSNPFEEALRLERTSPVKELPAIRPRTI 523
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,328,650
Number of Sequences: 5004
Number of extensions: 69636
Number of successful extensions: 231
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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