Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1500
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...   297   9e-82
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    34   0.017
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    27   1.9  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   3.3  

>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score =  297 bits (728), Expect = 9e-82
 Identities = 154/170 (90%), Positives = 154/170 (90%)
 Frame = -3

Query: 510 FSHLPTARSVSRTYRLSNGKSIQYYSTLFVRLIQSCSIQNLFDSEIVQSESKSTEALHSG 331
           FSHLPTARSVSRTYRLSNGKSIQYYSTLFVRLIQSCSIQNLFDSEIVQSESKSTEALHSG
Sbjct: 476 FSHLPTARSVSRTYRLSNGKSIQYYSTLFVRLIQSCSIQNLFDSEIVQSESKSTEALHSG 535

Query: 330 NLTEHLKTVCNEH*IKINF*RVGRIILSKSRHEEYRIANHIVAYLLSRSLKQNKTESDNS 151
           NLTEHLKTV                ILSKSRHEEYRIANHIVAYLLSRSLKQNKTESDNS
Sbjct: 536 NLTEHLKTV--------------ESILSKSRHEEYRIANHIVAYLLSRSLKQNKTESDNS 581

Query: 150 FAILTKILLEDLLNMLSLPEWCGTETIIRQFAMNLVMTVTNDKQAVSSKN 1
           FAILTKILLEDLLNMLSLPEWCGTETIIRQFAMNLVMTVTNDKQAVSSKN
Sbjct: 582 FAILTKILLEDLLNMLSLPEWCGTETIIRQFAMNLVMTVTNDKQAVSSKN 631



 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = -1

Query: 554 YPYQRDFIIEESLTNFLTCP 495
           YPYQRDFIIEESLTNF   P
Sbjct: 461 YPYQRDFIIEESLTNFSHLP 480


>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 33.9 bits (74), Expect = 0.017
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = -3

Query: 456 GKSIQYYSTLFVRLIQSCSIQNLFDSEIVQSESKSTEALHSGNLTE 319
           G   Q YST+++ + + CS QN+ DS   +S++KST +     +T+
Sbjct: 489 GDRSQKYSTMYMEVWRQCS-QNMLDSTYTKSQNKSTMSAKEREITK 533


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 995

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -3

Query: 501  LPTARSVSRTYRLSNGKSIQYYSTLFVRLI---QSCSIQNLFDSEIVQSESKST 349
            L + R    +  + +G SIQ  STLFV+ +    S SI++  D ++ +  SK T
Sbjct: 886  LDSDRKACGSLYVDDGVSIQQESTLFVKFVANGDSLSIESYGDLQVHEPLSKIT 939


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 489 RSVSRTYRLSNGKSIQYYSTLFVRLIQSCSIQNLFDSEIVQS 364
           RS+S   RL    S  +YS   +  + SC++    DS++  S
Sbjct: 759 RSISGGIRLLRKSSEVFYSFSILETVCSCNLDRFLDSKLDHS 800


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,427
Number of Sequences: 5004
Number of extensions: 43322
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)